Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a13r
(749 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27) 34 0.11
SB_37769| Best HMM Match : Endonuclease_5 (HMM E-Value=2.8) 32 0.57
SB_8967| Best HMM Match : RVT_1 (HMM E-Value=7.6e-18) 31 1.00
SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40) 30 2.3
SB_40160| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_37201| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_37925| Best HMM Match : SAP (HMM E-Value=0.065) 29 4.0
SB_24369| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_1120| Best HMM Match : SAP (HMM E-Value=0.065) 29 4.0
SB_51704| Best HMM Match : F-box (HMM E-Value=3.3e-05) 29 5.3
SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2) 29 5.3
SB_40572| Best HMM Match : Ank (HMM E-Value=0.0017) 29 5.3
SB_27040| Best HMM Match : Lac_bphage_repr (HMM E-Value=1.7) 29 5.3
SB_56374| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
Length = 1373
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 321 FSFRISY-KLLIVLVA*FNNIKSFTFSIDVSGSGGSILIFIMLFNLLCKIKHIKYNF 488
F+F + Y L+VL+ FN S I VSGSG L+ M+ + +C+ ++ F
Sbjct: 155 FAFSLMYFASLVVLIEYFNRHLSLANGIAVSGSGAGTLVISMIVDEMCRRYGLRAGF 211
>SB_37769| Best HMM Match : Endonuclease_5 (HMM E-Value=2.8)
Length = 651
Score = 31.9 bits (69), Expect = 0.57
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = -2
Query: 373 LNHATKTINNLYEILN--ENGHTEFQIECFNGCKMFIEDYCERNERKVQSVL-HLDLIRF 203
L K+ NNL IL+ ENG +F + + + +E Y ERK + +L H DL+
Sbjct: 22 LEDLKKSRNNLVTILSKIENGQQQFDRDFVSEFRCLLESY-GNTERKTKELLTHFDLLE- 79
Query: 202 VTESEILICQCCDEQLNRFSCKE 134
E E L+ ++FSC E
Sbjct: 80 -KELEQLLDIRNSTVADKFSCGE 101
>SB_8967| Best HMM Match : RVT_1 (HMM E-Value=7.6e-18)
Length = 483
Score = 31.1 bits (67), Expect = 1.00
Identities = 28/112 (25%), Positives = 40/112 (35%)
Frame = -2
Query: 598 YRDCLNLLRYRTMKLKELPSADYDKLYQDGHTDVYKMKLYLICLILHNKLKSIMNISMEP 419
Y L R + +L L D + +Y K +LI I H K++ N M P
Sbjct: 28 YDIVLTWCRSKMKQLNSLRQEDIEPIYLFITGGAGAGKSHLIKTIYHTVTKTMRNAPMNP 87
Query: 418 PLPETSIEKVKDFILLNHATKTINNLYEILNENGHTEFQIECFNGCKMFIED 263
LP + + +N TIN I + G I F +ED
Sbjct: 88 ELPSVLLMAPTEVAAINIEGTTINTALAIPVQTGDNVPPI--FRAASQTVED 137
>SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)
Length = 580
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -2
Query: 604 LNYRDCLNLLRYRT-MKLKELPSADYDKLYQDGHTDVYKMKLY 479
+ +R LL Y+T + ++E+ D+D Y++G+ + K+K Y
Sbjct: 533 MTWRSDGGLLTYKTALPVREMRFGDFDSSYEEGYHTLGKLKCY 575
>SB_40160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -2
Query: 601 NYRDCLNLLRYRTMKLKELPSADYDKLYQDGHTDVYK 491
+Y DC+++LRY+ L+ +P+ ++ + D D K
Sbjct: 88 SYHDCMDVLRYQLKPLRSMPAVILEQEFLDHMVDSIK 124
>SB_37201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 29.1 bits (62), Expect = 4.0
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Frame = -2
Query: 415 LPETSIEKVKDFILLNHATKTINNLYEILNEN-------GHTEFQIECFNGCKMFIEDYC 257
LPE ++VK++I L + +T+ YE H F +E + K+F
Sbjct: 187 LPEIIADQVKEWIDLFCSCRTVAEGYERARVTPYMHILFAHVPFFVEKYKCIKIFTGQGV 246
Query: 256 ERNERKVQSVLHLDLIRFVTESEIL 182
E+N +SVLH ++ + +IL
Sbjct: 247 EKNNDVARSVLHRKSNKWDSVGDIL 271
>SB_37925| Best HMM Match : SAP (HMM E-Value=0.065)
Length = 198
Score = 29.1 bits (62), Expect = 4.0
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Frame = -2
Query: 415 LPETSIEKVKDFILLNHATKTINNLYEILNEN-------GHTEFQIECFNGCKMFIEDYC 257
LPE ++VK++I L + +T+ YE H F +E + K+F
Sbjct: 6 LPEIIADQVKEWIDLFCSCRTVAEGYERARVTPYMHILFAHVPFFVEKYKCIKIFTGQGV 65
Query: 256 ERNERKVQSVLHLDLIRFVTESEIL 182
E+N +SVLH ++ + +IL
Sbjct: 66 EKNNDVARSVLHRKSNKWDSVGDIL 90
>SB_24369| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 589 CLNLLRYRTMKLKELPSADYDKLYQDGHTDVYKMKLYLICLILHNKL--KSIMNISMEPP 416
C+ +T E P+ + + QD H + L+ + ILH+ L + N +M PP
Sbjct: 320 CITYSHNKTTSTDEDPTPKDETMSQDPHEQPEALNLHPLEYILHSLLRRRHKQNQTMAPP 379
Query: 415 LPETS 401
P T+
Sbjct: 380 NPVTA 384
>SB_1120| Best HMM Match : SAP (HMM E-Value=0.065)
Length = 198
Score = 29.1 bits (62), Expect = 4.0
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Frame = -2
Query: 415 LPETSIEKVKDFILLNHATKTINNLYEILNEN-------GHTEFQIECFNGCKMFIEDYC 257
LPE ++VK++I L + +T+ YE H F +E + K+F
Sbjct: 6 LPEIIADQVKEWIDLFCSCRTVAEGYERARVTPYMHILFAHVPFFVEKYKCIKIFTGQGV 65
Query: 256 ERNERKVQSVLHLDLIRFVTESEIL 182
E+N +SVLH ++ + +IL
Sbjct: 66 EKNNDVARSVLHRKSNKWDSVGDIL 90
>SB_51704| Best HMM Match : F-box (HMM E-Value=3.3e-05)
Length = 337
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Frame = -2
Query: 526 KLYQDGHTDVYKMKLYLICLILHNKLKSIMNISMEPPLPETSIEKVKDFILLN------H 365
K + V++ +L + +LH + N + +P+ + D I ++ H
Sbjct: 67 KFSSEDWRQVFRERLQIEQKVLHLIERLTRNAFFKADVPDKQYTDMTDIIEMHDCDSKGH 126
Query: 364 ATKTINNLYEI-LNENGHTEFQ-IECFNGCKMFIEDYC 257
T+ L E+ L +++Q I+CFNG + +D C
Sbjct: 127 IENTLVELIEVDLRAADGSDYQYIDCFNGGRFLSKDQC 164
>SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
Length = 600
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -2
Query: 214 LIRFVTESEILICQCCDEQLNRFSCKEGHLNMFCS---LTFTQINSD 83
L R S+IL C DE L+R S L+ CS L+ INSD
Sbjct: 338 LSRVTINSDILSSVCSDEGLSRVSINSDTLSPVCSDVGLSRVTINSD 384
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = -2
Query: 214 LIRFVTESEILICQCCDEQLNRFSCKEGHLNMFCS---LTFTQINSD 83
L R S+IL C DE L+R S L+ CS L+ INSD
Sbjct: 205 LSRVSRNSDILSPVCSDEGLSRVSINSDTLSPLCSDEGLSRVSINSD 251
>SB_40572| Best HMM Match : Ank (HMM E-Value=0.0017)
Length = 205
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -2
Query: 181 ICQCCDEQLNRFSCKEGHLNMFCSLTFTQINSDEYLVCKACNATARSELYNIDPMCV 11
I Q + L + SC+EG + +L T + +Y K + ++S I P CV
Sbjct: 11 IAQMVQDFLGKLSCEEGTAELRDALNLTLLYMQKYY--KTLRSRSQSNTNGISPRCV 65
>SB_27040| Best HMM Match : Lac_bphage_repr (HMM E-Value=1.7)
Length = 276
Score = 28.7 bits (61), Expect = 5.3
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Frame = -2
Query: 415 LPETSIEKVKDFILLNHATKTINNLYEILNEN-------GHTEFQIECFNGCKMFIEDYC 257
LPE ++VK++I L + +T+ YE H F +E + K+F
Sbjct: 163 LPEIIADQVKEWIDLFCSCRTVAEGYERARVTPYMHILFAHVPFFVEKYKCIKIFTGHGV 222
Query: 256 ERNERKVQSVLHLDLIRFVTESEIL 182
E+N +SVLH ++ + +IL
Sbjct: 223 EKNNDVARSVLHRKSNKWDSVGDIL 247
>SB_56374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 483
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = -2
Query: 607 LLNYRDCLNLLRYRTMKLKELPSADYDKLYQDGHTDVYKMKLYLICLILHNKLKSIMNIS 428
L Y CLNLL++ L + D ++ + H Y++K I LI K+K + +
Sbjct: 272 LSTYNKCLNLLKWIDNVLDSTINKDLVQVRKQFHEKYYELKEERINLI-QAKIKEKLGMD 330
Query: 427 MEPPLPETSIEKVK 386
M L + ++V+
Sbjct: 331 MTLELNKGEFKEVE 344
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,966,359
Number of Sequences: 59808
Number of extensions: 434345
Number of successful extensions: 1059
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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