Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a13f
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31352| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_55932| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)                     28   5.4  
SB_42132| Best HMM Match : DAGK_cat (HMM E-Value=1.3e-35)              28   7.2  
SB_45116| Best HMM Match : EGF (HMM E-Value=0)                         28   7.2  
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_31352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 108 KMNQNILFEIHRRSITINKIEESTISWQKNVLAVRHDKGIQMYE--FSLNLEC 260
           K ++ ++F+ H+  I    +  ST+S+      V H  G+Q     + L  EC
Sbjct: 157 KSSKRVIFKHHKNQINFEDV--STVSYNNRCFTVVHGSGVQAQRVTYKLKTEC 207


>SB_55932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 485 VILYETNWRPGKMAYVHQIV*HRWVMCPHRRFQKHVCIQHIWSVPIKHLTREQLFSRTR 309
           V++  T     ++ Y H I+ H  ++   RR+  HV I H   +  +H T   L  RTR
Sbjct: 65  VVITHTPLLRTRLYYAHAIITHTSLLRT-RRYYAHVAITHTSLLRTRHFTHTSLL-RTR 121


>SB_16678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 378 DMLLEPAMWAHNPTMLDDLVNISHFSWSPVG 470
           DML  P  W H+ T LD+ V+++  SW   G
Sbjct: 259 DMLYIPPFWWHDVTSLDNCVSVT-LSWDISG 288


>SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)
          Length = 1065

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +3

Query: 213  HDKGIQMYEFSLNLECIDKNIDCSEIHVPTTKTSPAEKLFSGQVFDRYTPNMLYTDMLLE 392
            HDK +++YE+  +LE   K++D S +     +T+  +    G++F R  P   Y    L 
Sbjct: 986  HDKELRLYEYLESLENRVKSLDRS-LKNSHHRTNNKQATGVGRIFIRKLPPPPYLSEKLS 1044

Query: 393  PAMWAHNP 416
            P      P
Sbjct: 1045 PLFRIRTP 1052


>SB_42132| Best HMM Match : DAGK_cat (HMM E-Value=1.3e-35)
          Length = 558

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 316 LLKSCSLVKCLIGTLQICCIQTCFW 390
           L   CS+  CL GT    C Q C W
Sbjct: 212 LCSYCSVCGCLCGTAPRLCDQRCIW 236


>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2023

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = -3

Query: 542  FGSNNINLAYIV*DS*SRFVILYETNWRPGKM 447
            +GSNN+ ++Y+  D+ S+F I+ ++N   GKM
Sbjct: 1851 YGSNNVIMSYVTHDNSSQFQIVVKSN---GKM 1879


>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 316 LLKSCSL-VKCLIGTLQICCIQTCFWNRRCGHITQR 420
           +L S  L VK   GT QIC + + +    CGH +QR
Sbjct: 67  ILASLGLGVKVASGTRQICLLVSLWTTILCGHTSQR 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,584,517
Number of Sequences: 59808
Number of extensions: 380973
Number of successful extensions: 1013
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)