Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a11f
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8305| Best HMM Match : Plasmodium_HRP (HMM E-Value=8.8)             35   0.051
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024)                 31   1.1  
SB_422| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.1  
SB_3276| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_1489| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.77)            29   2.5  
SB_10291| Best HMM Match : Ataxin-2_N (HMM E-Value=8)                  29   3.4  
SB_44100| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_52226| Best HMM Match : Cytadhesin_P30 (HMM E-Value=9)              28   5.9  
SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)                 28   7.7  

>SB_8305| Best HMM Match : Plasmodium_HRP (HMM E-Value=8.8)
          Length = 366

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 5/198 (2%)
 Frame = +1

Query: 1   NSENRKNAAARIENQLPQHGYGFNDHKIVNSYENNNMVSYTQTKPXXXXXXXXXXXXXXX 180
           N+ N +      +N+ P   Y    H      + NN  + T                   
Sbjct: 150 NNTNNQTTHTTQQNKQPNDTYNPTTHTTQLHKQPNNTNNQTTHTTQQHIQSNNTNNQTTQ 209

Query: 181 XAEALLRGGSCNQKIQDISSAKYMPSSQKYNEFNSTVETGVAQVSHFPPILDYTENTYQQ 360
             +  ++  + N +    +     P+    N  N T +T    + H     + T +T QQ
Sbjct: 210 TTQQHIQPNNTNNQTTHTTQQHIQPN----NTNNPTTQTTKRHIQH-NNTYNPTAHTTQQ 264

Query: 361 QFPGTNLYNATTNTIS-----NSFYSNFMQNSGNLMTGNYASGPFPGDFIDYNQPTECHN 525
                + YN TT+T       N+ Y+   Q +   +  N    P       + QP + +N
Sbjct: 265 PKQPNDTYNTTTHTTQQHIQPNNTYNPTTQTTKRHIQHNNTYNPTTHTTQQHKQPNDTYN 324

Query: 526 YTSHKYEDLKMRNSSNYQ 579
            T+H  +     N+ N Q
Sbjct: 325 TTTHTTQQHIRPNNPNNQ 342


>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 346 NTYQQQFPGTNLYNATTNTISNSFYSNFMQNSGNLMTGNYA-SGPFPG 486
           N  Q+ +  +N  N +  +  N  Y+NF  +SGN M G    SG F G
Sbjct: 297 NPQQENYGNSNYGNYSNFSSDNGNYNNFSGSSGNQMGGGVVNSGNFGG 344


>SB_1235| Best HMM Match : Astacin (HMM E-Value=0.0024)
          Length = 249

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 368 LALIYTTLQRTQSRTLSTATSCRIAATS*LGITQVALFPVILLTTTNLQSVTITQVINT 544
           +  I TT+  T + T+ST T    A  S    T +     I  TTT + ++T T +I T
Sbjct: 166 ITTITTTITATITTTISTTTPFITATISTTITTTITTTTTITTTTTTIYTITTTIIIIT 224


>SB_422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 368 LALIYTTLQRTQSRTLSTATSCRIAATS*LGITQVALFPVILLTTTNLQSVTITQVINT 544
           +  I TT+  T + T+ST T    A  S    T +     I  TTT + ++T T +I T
Sbjct: 25  ITTITTTITATITTTISTTTPFITATISTTITTTITTTTTITTTTTTIYTITTTIIIIT 83


>SB_3276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = +1

Query: 388 ATTNTISNSF--YSNFMQNSGNLMTGNYASGPFPGDFIDYNQPTECHNYTSHKYEDLKMR 561
           ATT T++NS+  Y+N +  + ++   N  S     ++ +YN  +  + Y ++  ++  M+
Sbjct: 39  ATTTTLANSYNTYNNDISYNNDISYNNDISYNNDINYSNYNGYSNYNGYNNNSNDNSYMK 98

Query: 562 NSSNYQQEKLPSNYK-TSRRESATKH 636
           + + + +EK     K T      T H
Sbjct: 99  DETRHCREKKEETIKGTQTAACGTPH 124


>SB_1489| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.77)
          Length = 872

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/53 (28%), Positives = 20/53 (37%)
 Frame = +1

Query: 385 NATTNTISNSFYSNFMQNSGNLMTGNYASGPFPGDFIDYNQPTECHNYTSHKY 543
           N      +  +Y+      GN   GNYA G + G         +C NYT   Y
Sbjct: 631 NYADGNYAGGYYAGGYYTDGNYTDGNYAGGNYAGGNYAGGNYADC-NYTGGNY 682


>SB_10291| Best HMM Match : Ataxin-2_N (HMM E-Value=8)
          Length = 266

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 7/146 (4%)
 Frame = +1

Query: 238 SAKYMPSSQKYN-EFNSTVETGVAQVSHFPPILDYTENTYQQQFPGTNLYNATTNTISNS 414
           + +Y     +YN E+N+   T    V +     DYTE   +        YN   NT  N+
Sbjct: 32  NTEYNTDYTEYNTEYNTEYNTKYT-VYNTEYNTDYTEYNTEYNTEYNTEYNTEYNTEYNT 90

Query: 415 FYSNFMQNSGNLMTGNYASGPFPGDFIDYNQP------TECHNYTSHKYEDLKMRNSSNY 576
            Y+       N       +  +  ++ +YN        TE +   +  Y +     ++ Y
Sbjct: 91  EYNTEYNTEYNTEYNTEYNTDYNTEYTEYNTEYNTEYNTEYNTEYTEYYTEYNTEYNTEY 150

Query: 577 QQEKLPSNYKTSRRESATKHKLECSK 654
             E    + KT+++ +    +L  SK
Sbjct: 151 NTEYNTDSPKTAKKSAKENKELSPSK 176


>SB_44100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 433 QNSGNLMTGNYASGPFPGD--FIDYNQPTECHNYTSH 537
           +++ N+ T    S   P D  F  YNQ TE HN+T++
Sbjct: 250 ESTTNVATNTTTSLKLPEDIEFCIYNQETELHNFTAY 286


>SB_52226| Best HMM Match : Cytadhesin_P30 (HMM E-Value=9)
          Length = 264

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 454 TGNYASGPFPGDFIDYNQPTECHNYTSHKYEDLKMRNSSNYQ 579
           T N    PFPG+   Y QPT     T   Y   + R  + YQ
Sbjct: 182 TNNPMFRPFPGNPQGYQQPTTNQLPTDQAYRYRRPRGGARYQ 223


>SB_59467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 187 EALLRGGSCNQKIQDISSAKYMPSSQKYNEFNSTVE 294
           EA  R GSC+QKI+   S  Y PS  +++E ++ ++
Sbjct: 514 EANTRDGSCSQKIKP-DSLCYSPSHYEHDEVSAKMQ 548


>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
          Length = 921

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +1

Query: 301 VAQVSHFPPILDYTENTYQQQFPGTNLYNATTNT 402
           VA+V H    LD  E T Q  FP  N  N  TNT
Sbjct: 378 VAEVEH----LDADEKTTQPYFPSNNNQNTQTNT 407


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.309    0.124    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,055,116
Number of Sequences: 59808
Number of extensions: 388023
Number of successful extensions: 932
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)