Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a10r
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15004| Best HMM Match : zf-DHHC (HMM E-Value=2.7e-27)               68   7e-12
SB_55318| Best HMM Match : zf-DHHC (HMM E-Value=2.5e-12)               62   4e-10
SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)                   62   5e-10
SB_20368| Best HMM Match : zf-DHHC (HMM E-Value=2.6e-12)               55   5e-08
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)               48   8e-06
SB_56838| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   8e-05
SB_700| Best HMM Match : Fer4 (HMM E-Value=0.04)                       34   0.14 
SB_11625| Best HMM Match : HemN_C (HMM E-Value=3.9)                    29   4.0  
SB_5768| Best HMM Match : EGF (HMM E-Value=3.5e-06)                    29   5.3  
SB_18775| Best HMM Match : DUF1409 (HMM E-Value=0.78)                  28   7.0  
SB_31230| Best HMM Match : C1_1 (HMM E-Value=0.92)                     28   7.0  
SB_24801| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)                28   9.3  

>SB_15004| Best HMM Match : zf-DHHC (HMM E-Value=2.7e-27)
          Length = 559

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 24/55 (43%), Positives = 34/55 (61%)
 Frame = -3

Query: 594 CHTCRCLRPLRAKHCRICKRCVAYFDHHCPFIYNCVGVRNRMWFFLFVMSVAINC 430
           C TC   +P R+KHC +CK C+  FDHHC ++ NC+G  N  +F  F+ + A  C
Sbjct: 54  CPTCELDKPARSKHCSLCKACINRFDHHCSWVNNCIGANNYGFFIGFIFTAAALC 108


>SB_55318| Best HMM Match : zf-DHHC (HMM E-Value=2.5e-12)
          Length = 341

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = -3

Query: 624 KKRNIILS-RLCHTCRCLRPLRAKHCRICKRCVAYFDHHCPFIYNCVGVRNRMWFFLFVM 448
           K RN +    +C  C  +R     HC  C  CV    HHCPF  NC+G+RN ++++ F++
Sbjct: 117 KNRNFVKRYEMCSKCSRIRSSGTHHCSWCHTCVEMMCHHCPFTNNCIGLRNYIYYYSFLL 176

Query: 447 SVAINCTLSIYFACY 403
              +    + Y A +
Sbjct: 177 QAVVGLGYACYLAIF 191


>SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)
          Length = 393

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 23/63 (36%), Positives = 36/63 (57%)
 Frame = -3

Query: 606 LSRLCHTCRCLRPLRAKHCRICKRCVAYFDHHCPFIYNCVGVRNRMWFFLFVMSVAINCT 427
           +   C+ C  + P+ +KHCR+C  CV   DHHC F+  CVG +N   F +F+  V ++  
Sbjct: 223 VEEFCYHCELVAPIFSKHCRLCNHCVLAIDHHCLFLMCCVGYKNHRAFVVFMSLVLLSQM 282

Query: 426 LSI 418
           L +
Sbjct: 283 LFV 285


>SB_20368| Best HMM Match : zf-DHHC (HMM E-Value=2.6e-12)
          Length = 288

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = -3

Query: 600 RLCHTCRCLRPLRAKHCRICKRCVAYFDHHCPFI 499
           + C TC+  RP RA HC +C  CV  FDHHCP+I
Sbjct: 145 KFCFTCKIFRPPRASHCSMCDNCVERFDHHCPWI 178


>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 22/47 (46%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 594 CHTCRCLRPLRAKHCRICKRCVAYFDHHCPFIYNCVGVRN-RMWFFL 457
           C  C+   P RA HC +C  CV   DHHC F   CVG  N R + FL
Sbjct: 108 CPFCQLNSPPRAYHCHVCDICVLRRDHHCIFAGKCVGHSNYRYYLFL 154


>SB_56838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 21/57 (36%), Positives = 30/57 (52%)
 Frame = -3

Query: 342 FCALGWILTCTSVLHACMNLTTNEMFNYKRYPYLRDKRGRYQNPFSRGPIMNLFEFF 172
           F  +G +  C S     + +TTNE  N  RY ++ D  G  Q+PFSR    N+ +FF
Sbjct: 281 FLWVGALFICQSYQLFWIGMTTNERLNVARYTHMMDSTGNPQSPFSRNLFSNIGDFF 337


>SB_700| Best HMM Match : Fer4 (HMM E-Value=0.04)
          Length = 202

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 600 RLCHTCRCLRPLRAKHCRICKRC 532
           R C  C  ++PLR KHC  C RC
Sbjct: 118 RRCGYCAIMQPLRTKHCEDCGRC 140


>SB_11625| Best HMM Match : HemN_C (HMM E-Value=3.9)
          Length = 482

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 747 YWNAIMWMSWLIANRRDPGYVPQN 676
           YWNA   MS +I  ++DPG+  +N
Sbjct: 114 YWNAAFLMSDVIRTQQDPGFTLKN 137


>SB_5768| Best HMM Match : EGF (HMM E-Value=3.5e-06)
          Length = 270

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 306 VLHACMNLTTNEMFNYKRYPYLRDKRGRYQNPFSRGPIMNLFEFFVCLPDKC 151
           V  AC  +   +  N      L  K G Y   F + P ++ +E  VC+P+ C
Sbjct: 136 VNQACRAVNYRKRANLGSCKLLSAKAGSYPKDFLKFPGIDYYETQVCVPNPC 187


>SB_18775| Best HMM Match : DUF1409 (HMM E-Value=0.78)
          Length = 356

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 403 ITGKVDRQCAVDRNAHHEQEEPHSIANSDTVVDKRAVMVKIR 528
           I  K +  C ++RN  +       IAN D V+D+   ++++R
Sbjct: 54  INSKDEHACQINRNVGNFVAALQMIANHDVVLDQHLTVIRMR 95


>SB_31230| Best HMM Match : C1_1 (HMM E-Value=0.92)
          Length = 174

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 594 CHTCRCLRPLRAKHCRIC 541
           CH C+   P RA HC +C
Sbjct: 96  CHDCQMNSPGRAHHCNLC 113


>SB_24801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 264 NYKRYPYLRDKRG-RYQNPFSRGPIMNLFEFFVCLPDKCD 148
           N + Y Y R + G RYQ  F   P   L+ F V   D+C+
Sbjct: 11  NDQAYRYRRPRGGARYQLLFPLPPSSGLYSFLVSCDDECE 50


>SB_35860| Best HMM Match : Sugar_tr (HMM E-Value=1e-04)
          Length = 544

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 211 WILVSSSFVPQVWISFVIKHFV 276
           W+  +SSFVP  W+  V + F+
Sbjct: 133 WVAFASSFVPYYWLYAVFRFFI 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,485,150
Number of Sequences: 59808
Number of extensions: 520513
Number of successful extensions: 1226
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)