Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a08f
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_37820| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_4425| Best HMM Match : DNA_ligase_A_M (HMM E-Value=0)               28   5.4  
SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 480 HFQLYRAEAMIFAFRLLWPKVCSTASLCDILL 385
           H   Y+ +AM+F   +LWP +    +L  +++
Sbjct: 41  HLVTYQTQAMVFTLCILWPGLSEVGALSGLII 72


>SB_37820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 412 YCIS-LRHSFDRTGGRRGTPLIFMQDTYCPDCRTDFTS 302
           +CIS LR + DRT  ++    I MQD    DC  D  S
Sbjct: 73  FCISRLRRTVDRTNRKQPPSWIEMQDGATLDCEVDANS 110


>SB_4425| Best HMM Match : DNA_ligase_A_M (HMM E-Value=0)
          Length = 575

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 525 ESEEIQTECKITSVLSDEVYE 587
           ESEE QT CKI +  +DEV E
Sbjct: 412 ESEEFQTICKIGTGFTDEVLE 432


>SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -1

Query: 225 STVAVTAHQQHCNLYIITLKYAAHNKDCTYSIKL 124
           +T+A+ + Q HCN   ITL+Y  HN   T +I+L
Sbjct: 37  NTIAIPS-QYHCNTITITLQY-HHNLRNTMTIQL 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,202,164
Number of Sequences: 59808
Number of extensions: 367367
Number of successful extensions: 645
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)