Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a04r
(747 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10) 65 5e-11
SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06) 37 0.020
SB_5366| Best HMM Match : LRR_1 (HMM E-Value=0.00075) 36 0.046
SB_23666| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.081
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 33 0.19
SB_8275| Best HMM Match : HlyIII (HMM E-Value=1) 33 0.25
SB_21609| Best HMM Match : Peptidase_M23 (HMM E-Value=5.7) 32 0.57
SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10) 32 0.57
SB_7760| Best HMM Match : Peptidase_M23 (HMM E-Value=5.7) 32 0.57
SB_14262| Best HMM Match : DUF999 (HMM E-Value=1.1) 31 0.75
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_11751| Best HMM Match : Peptidase_C23 (HMM E-Value=0.34) 30 2.3
SB_47530| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0) 29 3.0
SB_40224| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_51334| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32) 28 7.0
SB_55749| Best HMM Match : SRCR (HMM E-Value=0) 28 9.2
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10)
Length = 447
Score = 65.3 bits (152), Expect = 5e-11
Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 5/173 (2%)
Frame = -1
Query: 747 LTCLLMNGCSLRSDYVMQVEWEKSSVQELDLTAT-DLSTECLIDMLTRIPNLRFLSAGQI 571
+T LL+ L +M V W+++ VQELDLT ++T L +LTR+PN+R+ Q
Sbjct: 204 ITSLLIRFTKLNDVALMSVNWDRTKVQELDLTGCYFVTTTGLSSVLTRLPNVRYFKMNQC 263
Query: 570 NGFNDSV-LKAWVE-AGTAR--NLVALDVDSSDNLSDEALHRFLSRHGSQLHGLVLGGMP 403
GF + L+ + E TA+ +L LD+ + LS E L L R L L + P
Sbjct: 264 -GFRHILHLRIYQEIKPTAKYSSLETLDLRWNFLLSAECLEGLL-RQAPNLRYLGVSHSP 321
Query: 402 HITDQLWQSVLQLLNNAKILIMGTQERLGINIHVDQLMDGIANSCPNLERLEL 244
I + ++L+ + N K+L G + ++ L+ + SCP+LE + L
Sbjct: 322 RIPPAVLAAMLKFVPNLKVLEFGPLRKESLS--ESHLVPNLIQSCPSLEAVSL 372
>SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)
Length = 1020
Score = 36.7 bits (81), Expect = 0.020
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 747 LTCLLMNGCSLRSDYVMQVEWEKSSVQELDLT-ATDLSTECLIDMLTRIPNLRFL 586
LT LL+NG + D V++ W + ++ LDL L + +L +P LR+L
Sbjct: 785 LTTLLLNGTRVSGDAVVEAHWSNTVIEALDLRHCAHLDDLAITTVLILLPRLRYL 839
>SB_5366| Best HMM Match : LRR_1 (HMM E-Value=0.00075)
Length = 310
Score = 35.5 bits (78), Expect = 0.046
Identities = 31/103 (30%), Positives = 48/103 (46%)
Frame = -1
Query: 642 LSTECLIDMLTRIPNLRFLSAGQINGFNDSVLKAWVEAGTARNLVALDVDSSDNLSDEAL 463
LS + + + +R NLR L+ G N+ + G NLV LDV D + D AL
Sbjct: 157 LSKQRVNENRSRFGNLRELNLRSCEGVNNEGIAHLAVGGL--NLVCLDVSFCDKIGDVAL 214
Query: 462 HRFLSRHGSQLHGLVLGGMPHITDQLWQSVLQLLNNAKILIMG 334
+ +S + L L L HITD+ + + L ++L +G
Sbjct: 215 NH-ISSGLNHLQNLGLNS-SHITDEGLCKISRHLRELRVLNIG 255
>SB_23666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 34.7 bits (76), Expect = 0.081
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = -1
Query: 711 SDYVMQVEWEKSSVQELDLTATDLS---TECLIDMLTRIPNLRFLSAGQINGFNDSVLKA 541
+ YV ++ E + +LD++ L +E + D+L PN+ L+A NGF++ K
Sbjct: 158 ASYVAEMLRENCYITDLDMSENKLGDHGSESIADVLLHNPNIHRLTANG-NGFDEKAAKI 216
Query: 540 WVEAGTARNLVALDVDSSDNLSDEALH 460
EA + L S++++D LH
Sbjct: 217 LAEAIKDMSENKLGDHGSESIADVLLH 243
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2
Query: 455 SCRGTARSCTGWCWAGCRTSPTSCGRACCSC 363
SCR SC C++ CR + SC ACCSC
Sbjct: 145 SCRVACCSCRVVCYS-CRVACCSCRVACCSC 174
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 455 SCRGTARSCTGWCWAGCRTSPTSCGRACCSC 363
SCR SC C++ CR SC ACCSC
Sbjct: 166 SCRVACCSCRVVCYS-CRVVCYSCRVACCSC 195
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 455 SCRGTARSCTGWCWAGCRTSPTSCGRACCSC 363
SCR SC C++ CR SC ACCSC
Sbjct: 187 SCRVACCSCRVVCYS-CRVVFCSCRVACCSC 216
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 455 SCRGTARSCTGWCWAGCRTSPTSCGRACCSC 363
SCR SC C++ CR SC ACCSC
Sbjct: 208 SCRVACCSCRVVCYS-CRVVCYSCRVACCSC 237
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 455 SCRGTARSCTGWCWAGCRTSPTSCGRACCSC 363
SCR SC C++ CR SC ACCSC
Sbjct: 124 SCRIACCSCRVVCYS-CRVVFCSCRVACCSC 153
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 455 SCRGTARSCTGWCWAGCRTSPTSCGRACCSCSTTLR 348
SCR SC C CR SC ACCSC ++
Sbjct: 236 SCRVVCYSCRVAC-CSCRVVCYSCRVACCSCRVHMK 270
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -2
Query: 455 SCRGTARSC-TGWCWAGCRTSPTSCGRACCSC 363
SCR SC + CR +SC ACCSC
Sbjct: 257 SCRVACCSCRVHMKCSSCRVVCSSCRVACCSC 288
>SB_8275| Best HMM Match : HlyIII (HMM E-Value=1)
Length = 239
Score = 33.1 bits (72), Expect = 0.25
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = -1
Query: 471 EALHRFLSRHGSQLHGLVLGGMPHITDQLWQSVL--QLLNNAKILIMGTQERLGINIHVD 298
+ +R S G+QL G +L G P + W+ V+ LL +L+MGT + H
Sbjct: 73 QQFYRHRSPLGAQLLGFILAGFPRLVRAEWRFVVAASLLFFGSLLLMGT-----LVYHFP 127
Query: 297 QLMDGIANSCPNLERLELRWDPENLRFSDKSQK 199
L+ G+ + + +E +DP+ R S++
Sbjct: 128 DLVYGVM-APDQVGEMEKMYDPDARRIGRFSER 159
>SB_21609| Best HMM Match : Peptidase_M23 (HMM E-Value=5.7)
Length = 527
Score = 31.9 bits (69), Expect = 0.57
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Frame = -1
Query: 648 TDLSTECLIDMLTRIPNLRFLSAGQINGFNDSVLKAWVEAGTARNLVALDVDS---SDNL 478
T ++E + +PN + +AG ++ +D+ + +E A+ ++A D++ S+
Sbjct: 68 TTPNSEFYAASIYHLPNPVYDAAGLLDFMSDTWDQILLENPNAKIIIAGDINQLNISEFT 127
Query: 477 SDEALHRFLSRHGSQLHGLV 418
ALH+ + +HGS GLV
Sbjct: 128 RQHALHQMVKKHGSVNKGLV 147
>SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10)
Length = 637
Score = 31.9 bits (69), Expect = 0.57
Identities = 29/93 (31%), Positives = 50/93 (53%)
Frame = -1
Query: 519 RNLVALDVDSSDNLSDEALHRFLSRHGSQLHGLVLGGMPHITDQLWQSVLQLLNNAKILI 340
RNL LD+ +NL+DE L R++S +L L L G ++ + ++Q L ++
Sbjct: 172 RNLEVLDLTWCENLNDECL-RYVSHSCPKLRVLSLRGCDWVSYTGVKYIVQSL--TQLTN 228
Query: 339 MGTQERLGINIHVDQLMDGIANSCPNLERLELR 241
+ + GIN V +L IAN P+L+ L+++
Sbjct: 229 LDFKWSHGINSIVVKL---IANHLPDLQYLDVK 258
>SB_7760| Best HMM Match : Peptidase_M23 (HMM E-Value=5.7)
Length = 555
Score = 31.9 bits (69), Expect = 0.57
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Frame = -1
Query: 648 TDLSTECLIDMLTRIPNLRFLSAGQINGFNDSVLKAWVEAGTARNLVALDVDS---SDNL 478
T ++E + +PN + +AG ++ +D+ + +E A+ ++A D++ S+
Sbjct: 68 TTPNSEFYAASIYHLPNPVYDAAGLLDFMSDTWDQILLENPNAKIIIAGDINQLNISEFT 127
Query: 477 SDEALHRFLSRHGSQLHGLV 418
ALH+ + +HGS GLV
Sbjct: 128 RQHALHQMVKKHGSVNKGLV 147
>SB_14262| Best HMM Match : DUF999 (HMM E-Value=1.1)
Length = 505
Score = 31.5 bits (68), Expect = 0.75
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 319 ETLLSSHYKDLSVV-EQLQHALPQLVGDVRHPAQHQ 423
+TL S+ Y+ L ++ E+LQ P++ GD+ P +HQ
Sbjct: 420 KTLTSNEYRQLEMMREKLQWNYPRIAGDLSKPYRHQ 455
>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -2
Query: 458 ASCRGTARSCTGWCWAGCRTSPTSCGRACCSCST 357
A C GT G C GCRTS CG C T
Sbjct: 245 AGC-GTCGKGWGTCGKGCRTSGKGCGTCGKGCGT 277
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 452 CRGTARSCTGWCWAGCRTSPTSCGRACCSCST 357
CR + + C G C GC T CG C T
Sbjct: 261 CRTSGKGC-GTCGKGCGTCGKGCGTCGKGCGT 291
>SB_11751| Best HMM Match : Peptidase_C23 (HMM E-Value=0.34)
Length = 723
Score = 29.9 bits (64), Expect = 2.3
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = -1
Query: 573 INGFNDSVLKAWVEAGTARNLVALDVDSSDNLSDEALHRFLSRHGSQLHGLVLGGMPHIT 394
I +D+VL+ V + LV LD+ + ++D+ L + RH + L+L +T
Sbjct: 481 IQAVDDTVLEE-VCSTAGGTLVELDLSACSAITDDGLSA-IPRHCYVIESLILSFCSKVT 538
Query: 393 DQ-LWQSVLQLLNNAKILIMGTQERLGINIHVDQLMDGIANSCPNLERLEL 244
+ L+ + A+I +M +I V + +A SCPNLE L L
Sbjct: 539 GRRLFPLLEDPKRAAEIRVMIANGCKAFSIDV---IRKLAMSCPNLETLLL 586
>SB_47530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 939
Score = 29.5 bits (63), Expect = 3.0
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Frame = -1
Query: 615 LTRIPNLRFLSAGQINGFNDSVLKAWVEAGTARNLVALDVDSSD-NLSDEALHRFLSRHG 439
+T+ P R + FN +L ++ + +V + V + LS + L + +G
Sbjct: 736 VTKAPKARLPVGDKRRDFNLGILVQVADSIGSAVIVGMSVKVIEPELSLQTLDAAVGANG 795
Query: 438 SQLHGLVLGGMPHITDQLWQSVLQLLNNAKILIMGTQERLGINIHVDQLMDGIANSCPNL 259
H L + + + Q SVL ++N+ M QE++ I D + D + N+
Sbjct: 796 EMHHYLRMNNI-ELAAQRATSVLSVVNHMSAKKMNVQEKIKIK---DSITDAWSTIMVNV 851
Query: 258 ERLE 247
RLE
Sbjct: 852 TRLE 855
>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1805
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 387 LWQSVLQLLNNAKILIMGTQERLGINIHVDQLMDGIANS 271
LWQSV QL+ +A +I+ Q+ + + +L+D N+
Sbjct: 1252 LWQSVCQLVASAMTIILDVQKHYELFTQLHELLDAWLNT 1290
>SB_40224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = +1
Query: 535 HPSFKYRVIEP-VDLAGAQKAQV-----RYPGEHVYQALGRQVCGGQIQFLNGGFLPLH 693
+P FK VIE V+ G + ++ + P EH Y+A+G + G+ + NGG L H
Sbjct: 5 NPYFKRHVIEKYVEFLGREHRKIVVIVPQEPSEHTYRAMGSKDAVGRAK-KNGGRLRTH 62
>SB_51334| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1402
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 536 TQALSTESLNPLIWPALRKRRFGIRVSMSIRHSVDKSVAVK 658
T T LN L WP L KRR R+++ + +V+K A+K
Sbjct: 861 TPGTVTNILNDLEWPPLSKRRQDARLTLFYK-AVNKKSALK 900
>SB_40344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 401
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 536 TQALSTESLNPLIWPALRKRRFGIRVSMSIRHSVDKSVAVK 658
T T LN L WP L KRR R+++ + +V+K A+K
Sbjct: 299 TPGTVTNILNDLEWPPLSKRRQDARLTLFYK-AVNKKSALK 338
>SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32)
Length = 698
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 536 TQALSTESLNPLIWPALRKRRFGIRVSMSIRHSVDKSVAVK 658
T T LN L WP L KRR R+++ + +V+K A+K
Sbjct: 596 TPGTVTNILNDLEWPPLSKRRQDARLTLFYK-AVNKKSALK 635
>SB_55749| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1224
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 449 RGTARSCTGWCWAGCRTSPTSCGRACCSCS 360
RG + WC +G +S SC CC CS
Sbjct: 736 RGPIQMTRVWC-SGTESSLMSCASDCCYCS 764
>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1105
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 434 SCTGWCWAGCRTSPTSCGRACCSCS 360
SC CW C + +C + C SC+
Sbjct: 52 SCACACWKRCHSCACACWQRCHSCA 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,271,162
Number of Sequences: 59808
Number of extensions: 381399
Number of successful extensions: 1890
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1883
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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