Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a03f
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34374| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_54470| Best HMM Match : E7 (HMM E-Value=1.5)                        28   7.3  
SB_47643| Best HMM Match : Peptidase_C48 (HMM E-Value=1.5e-05)         28   7.3  
SB_38073| Best HMM Match : ABC_tran (HMM E-Value=1.2e-17)              28   7.3  
SB_19883| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_34374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = +3

Query: 327 TLPLKEVFPGGLPNRFSVEGTFNARGQRRPWSLLRARSNNVLFSLILMPEPRKVAVLVQG 506
           ++P   +FP G+P  FS+  T          +L    + N   SL L   P ++    + 
Sbjct: 20  SVPTGTLFPYGIPESFSIMATVRTEIDNSG-NLFSVYNANGELSLSLSVNPVELQYRTRS 78

Query: 507 ---SRAVFKSPELFTTGWHKLHVAVANRSVHIAVDC 605
              SR  F++  L    WH++ ++VA   V +  DC
Sbjct: 79  GGVSRIQFQA-SLADGEWHRIAISVARDQVKLLSDC 113


>SB_54470| Best HMM Match : E7 (HMM E-Value=1.5)
          Length = 216

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 32/112 (28%), Positives = 46/112 (41%)
 Frame = +3

Query: 183 PNSKDSDFQTVALIAVYRLDRSDTTGVTLVQGSQDLQMAYRIGGGANLTLPLKEVFPGGL 362
           PN  ++   TV        D+ D T       S D +   +I      TL L E    G 
Sbjct: 92  PNLDETPQHTVYCGMTLLFDQDDMTQEEDETNSDDKEPDLQIVVTKETTLTLAEAALHGE 151

Query: 363 PNRFSVEGTFNARGQRRPWSLLRARSNNVLFSLILMPEPRKVAVLVQGSRAV 518
             R  V+     +G     SLL AR+N++L+SL L  + ++  VL     AV
Sbjct: 152 RLRKFVQD----KGHEE-LSLLFARANDILYSLQLAGQKKQTMVLYSTPNAV 198


>SB_47643| Best HMM Match : Peptidase_C48 (HMM E-Value=1.5e-05)
          Length = 504

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 32/112 (28%), Positives = 46/112 (41%)
 Frame = +3

Query: 183 PNSKDSDFQTVALIAVYRLDRSDTTGVTLVQGSQDLQMAYRIGGGANLTLPLKEVFPGGL 362
           PN  ++   TV        D+ D T       S D +   +I      TL L E    G 
Sbjct: 380 PNLDETPQHTVYCGMTLLFDQDDMTQEEDETNSDDKEPDLQIVVTKETTLTLAEAALHGE 439

Query: 363 PNRFSVEGTFNARGQRRPWSLLRARSNNVLFSLILMPEPRKVAVLVQGSRAV 518
             R  V+     +G     SLL AR+N++L+SL L  + ++  VL     AV
Sbjct: 440 RLRKFVQD----KGHEE-LSLLFARANDILYSLQLAGQKKQTMVLYSTPNAV 486


>SB_38073| Best HMM Match : ABC_tran (HMM E-Value=1.2e-17)
          Length = 398

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
 Frame = +3

Query: 348 FPGGLPNRFSVEGTFNARGQRRPWSLLRA--RSNNVL-FSLILMPEPRKVAVLVQGS-RA 515
           FP GL  + +  G   + GQR+   L RA  R N +L          ++  VL+Q + R+
Sbjct: 254 FPDGLDTKVTESGNNFSVGQRQLICLARALLRRNVILIIDEATAHVDQRTDVLIQKTIRS 313

Query: 516 VFKSPELFTTGWHKLHVAVANRSVHIAVDCVELNP 620
            FK   + T   H+L+  +    V +   C  LNP
Sbjct: 314 KFKDCTVLTIA-HRLNTIMDMDRVMLLNPCTCLNP 347


>SB_19883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
 Frame = -1

Query: 586 TDRFATATC--SLCHPVVNNSGLLNTALEPWTRTATFLGSGIKMRENS-TLFERARRRLH 416
           TD  +T TC   +   V    G  NTA  PW     F+ S  + R+ +  L ER RR + 
Sbjct: 281 TDARSTLTCRFQIFWLVARTMGYTNTAFNPWI-YFLFVSSTAQNRQRTMELIERGRRFIS 339

Query: 415 GLRCPRALKVPSTLNRFG 362
            L            NR G
Sbjct: 340 TLSVSTRNPAARRNNRVG 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,434,474
Number of Sequences: 59808
Number of extensions: 423255
Number of successful extensions: 1520
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)