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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a10f
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51625| Best HMM Match : LRR_1 (HMM E-Value=2.7e-10)                 40   0.001
SB_2154| Best HMM Match : LRR_1 (HMM E-Value=4.9e-06)                  39   0.004
SB_53214| Best HMM Match : LRR_1 (HMM E-Value=7.4e-06)                 38   0.006
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)                   36   0.034
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)                   31   0.72 
SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)                   28   5.1  
SB_25208| Best HMM Match : PAN (HMM E-Value=0.019)                     28   5.1  
SB_34117| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_19634| Best HMM Match : LRR_1 (HMM E-Value=2.6e-17)                 27   8.9  

>SB_51625| Best HMM Match : LRR_1 (HMM E-Value=2.7e-10)
          Length = 212

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = +3

Query: 357 CPKPCVCHTE---GD-SSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLT 497
           CP  C C  E   G+ S+  +V+C+G  L  FP PL  RT+ L L +N+L+
Sbjct: 74  CPAKCECSREKIAGELSTGILVNCTGRRLRNFPLPLPPRTSTLLLNDNRLS 124


>SB_2154| Best HMM Match : LRR_1 (HMM E-Value=4.9e-06)
          Length = 150

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +3

Query: 333 ATQSGDSTCPKP----CVCHTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTG 500
           A     + CP+P    C C   G  +N  V C   GL EFP  + + TT L+L  NKL  
Sbjct: 5   AATGAHAPCPRPAVGTCTCVQTGSYTN--VKC--LGLDEFPLDVPINTTSLDLSENKLVS 60

Query: 501 IP 506
            P
Sbjct: 61  FP 62


>SB_53214| Best HMM Match : LRR_1 (HMM E-Value=7.4e-06)
          Length = 298

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 357 CPKPCVCHTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTGIP 506
           CP+ C C+T    S  + +C G  LT FP  +D  T  L L  N+L  +P
Sbjct: 5   CPQKCSCYTR---SWLITNCRGKYLTSFPDQVDNTTVELILTYNRLKALP 51


>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
          Length = 870

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 357 CPKPCVCHTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTGIP 506
           CP+ C C         +VDCS  GL   P  +      +NL+ N +  +P
Sbjct: 484 CPRECTCAVREIDQTVLVDCSERGLHRLPFKMPAGELEVNLRGNAIRELP 533


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +3

Query: 291 LLEDVQLTANAEGTATQSGDSTCPKPCVCHTEGDSS---NFVVDCSGYGLTEFPTPLDVR 461
           LL  +Q     +     S   TCP  C C+ E        ++ D S  GL   P    ++
Sbjct: 10  LLSTLQCVRLGQANVISSVPITCPAYCSCYGEHRVDIYCGYLADDSFSGLRHVPRNFPMQ 69

Query: 462 TTILNLQNNKLTGI 503
            ++L+L NN ++ I
Sbjct: 70  VSLLSLYNNLISTI 83


>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
          Length = 1655

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 369 CVCHTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTGIPKD 512
           CV  T G  S  +     + +T FP+ L   +TI++L  N L  +P D
Sbjct: 799 CVPITHGSKSLVLTASHHHTITTFPSSLPQTSTIIDLSENLLKVLPPD 846


>SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)
          Length = 1206

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 357  CPKPCVC-HTEGDSSNFVVDCSGYGLTEFPTPLDVRTTILNLQNNKLTGI 503
            CP  C C +T G     ++   G  LT  P  + + T  L   +N++T +
Sbjct: 960  CPSSCSCVYTSGSGPRRIL-VKGQELTAIPKTMPLDTFALMFSSNRITNV 1008


>SB_25208| Best HMM Match : PAN (HMM E-Value=0.019)
          Length = 245

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 469 IVVRTSKGVGNSVSPYPEQSTTKLLESP 386
           ++++T  G+  SVS Y E  T KLLE P
Sbjct: 11  LLIQTITGISASVSQYFETHTDKLLEVP 38


>SB_34117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 379 WHTHGFGHVESPDCVAVPSALAVN 308
           W THG GH+ S     V   L VN
Sbjct: 93  WRTHGTGHIRSTTVTQVLKILMVN 116


>SB_19634| Best HMM Match : LRR_1 (HMM E-Value=2.6e-17)
          Length = 267

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 465 TILNLQNNKLTGIPKDVASXXXXXXXXXXXXSIMGL--DLGSVSELPGL 605
           T+L+L +N LT IP+D+               I GL   +G++S L  L
Sbjct: 130 TVLDLHDNLLTSIPEDIIILRDLERLDLTNNDISGLPYKIGNMSNLKSL 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,413,205
Number of Sequences: 59808
Number of extensions: 291074
Number of successful extensions: 735
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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