Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a09r
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_11273| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)                28   6.5  
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)         28   6.5  
SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)            28   8.5  
SB_49379| Best HMM Match : FxsA (HMM E-Value=2.2)                      28   8.5  
SB_38761| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -3

Query: 324 NCCFLSIFIHCCYTLLLLAKDGTGSLGLNI 235
           N CF S   H C+TLL  AK    S G NI
Sbjct: 238 NVCFASSSYHFCFTLLSFAKLYVDSFGGNI 267


>SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = +3

Query: 435 REQVDEHAEHETDGERGEGFKDTGQYQILDGVLYVVQTDCHHSGETQTENQ--EKFGTKL 608
           R +   H + E  G  G G +DT   +I D      Q+  H   + +  +Q  EK   + 
Sbjct: 91  RRKKKPHEKKEGKGPSGNGERDTSTTEIGDVTTRHTQSMKHTQDKRRESSQIKEKHRRED 150

Query: 609 MNAEG*PERGGNAGETDNQGV 671
              +    RG NA E   QGV
Sbjct: 151 TFPKEKEARGANANEISKQGV 171


>SB_11273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = +2

Query: 491 LQRYRTVPNSGWSSVRSTNRLSPLRRNSN*KSRKIWHQAYER----RGVARARWECRRDR 658
           L R  TV NS  SSV S+ R +PL +N    +RK   Q+Y      +G  R  W  R   
Sbjct: 25  LARSVTV-NSMTSSVLSSARRTPLSQNPQSATRKSLPQSYSAVQCVKGYTRLAWLDRHTL 83

Query: 659 QSGCACRRSG 688
              C   + G
Sbjct: 84  YGKCEFAKEG 93


>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
          Length = 815

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 465 ETDGERGEGFKDTG--QYQILDGVLYVVQTDCHHSGETQTENQEKF 596
           +TD  R E  +  G  ++QI   +  +V T  HH G T+ E  +KF
Sbjct: 641 DTDVYRNEPLQRYGMLKWQIWRALRLIVDTGLHHRGMTRQEALQKF 686


>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
          Length = 1293

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 477 ERGEGFKDTGQYQILDGVLYVVQTDCHH--SGETQTENQEK 593
           + GE F++  + + L   +  +QT+CHH  S  +  ++QEK
Sbjct: 39  DSGESFEEHEEIKSLKNEIVRLQTECHHWKSMSSNQDSQEK 79


>SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)
          Length = 321

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 521 GWSSVRSTNRLSPLRRNSN*KSRKIWHQAYERRGVARARWECRRDRQSGC 670
           G   + S++ L+PLRR+SN  SRK   Q    R + R  +E     +S C
Sbjct: 81  GRIEIHSSHSLAPLRRSSN-MSRKTESQKTINRFLQRIYYEPNHPTESIC 129


>SB_49379| Best HMM Match : FxsA (HMM E-Value=2.2)
          Length = 261

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
 Frame = -1

Query: 617 CVHKLGAK--FFLIFSLSFAGVVTVGLYYVQNSIQNLVLSC-IFEALTSLAISLVFCVLV 447
           C   +G K  +F+ F L FA    V +     S+   VL+  +  ++     + V   L 
Sbjct: 57  CSDFIGRKGTYFVFFGLGFALYAAVPVLGQLGSLALFVLAFGVILSMYGGGFATVPAYLA 116

Query: 446 DLFPTNLRVMAAALSLTAGRGGGLIGNLSFGYL 348
           DLF T +        LTA    G++G +   YL
Sbjct: 117 DLFGTQMVGAIHGRLLTAWAAAGVLGPVLVNYL 149


>SB_38761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 512 PNSGWSSVRSTNRLSPLRRNSN*KSRKIWHQA 607
           P     S+R   RL P++  SN  + + WH+A
Sbjct: 109 PYVAMDSIRYATRLRPMKNGSNRSTYQSWHKA 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,409,594
Number of Sequences: 59808
Number of extensions: 431499
Number of successful extensions: 1320
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)