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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10a01r
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    33   0.32 
SB_39796| Best HMM Match : VWA (HMM E-Value=0)                         32   0.42 
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)                       31   0.74 
SB_12770| Best HMM Match : MH1 (HMM E-Value=0)                         29   3.0  
SB_58559| Best HMM Match : AA_permease (HMM E-Value=1.5e-07)           29   3.9  
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)                  29   3.9  
SB_51028| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)                      28   6.9  
SB_33889| Best HMM Match : zf-CCHC (HMM E-Value=2.1e-05)               28   6.9  
SB_51046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_30055| Best HMM Match : Histone (HMM E-Value=0.97)                  28   9.1  
SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)                 28   9.1  
SB_36412| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -1

Query: 398  FSVDLTLPKLSASSVAVNGEATIFGR---ELAVASSGSLVVEDLRLVSTVSIRLLPSISI 228
            F+ D  +P+L++ ++ +N + +  G+     +  S   +V ED + +S V I L  SIS 
Sbjct: 1837 FAFDYGIPRLTSDTITLNVDGSAAGQLPPRFSKVSYHFMVSEDAKYLSLVGIILARSISG 1896

Query: 227  RELSAVLTVGNV 192
              L   +  GNV
Sbjct: 1897 ARLDYKIVSGNV 1908


>SB_39796| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2119

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
 Frame = -1

Query: 383  TLPKLSASSVAVNGEATIFGRELAVASSGS-----LVVEDLRLVSTVSIRLLPSISIREL 219
            T P    + V++ G+AT+   +L V  +G+     L+V   R+ STV + +  + S  +L
Sbjct: 816  TCPARLKNRVSIKGQATLVIADLTVQDTGTYGCSLLLVTGKRIDSTVKLVVTGNDSTVKL 875

Query: 218  -------SAVLTVGNVESALKVVLFGEDVSERLNDALNNKLPELLETYND 90
                   +  L V   +S +K+V+ G D + +L    N+   +L+ T ND
Sbjct: 876  VVTGNDSTVKLVVTGNDSTVKIVVTGNDSTVKLVVTGNDSTVKLVVTGND 925


>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 2119

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = +1

Query: 517  SPSAFSM*IGSSPRSWIPE------VMRSMTFTINCSTKFCLSLSRSTFEGTAATLAARV 678
            SP  +SM   SSP  WIP       V+RS T T   S +  + + RS +E  A T++  V
Sbjct: 1321 SPVNYSMTNKSSPAQWIPSDDGGTPVVRSATHTPVESREASVFIVRSPYETLARTISQDV 1380

Query: 679  TST 687
            T +
Sbjct: 1381 TQS 1383


>SB_12770| Best HMM Match : MH1 (HMM E-Value=0)
          Length = 376

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 627 RKTEFGRAIDCERHRSHHFRYPRAWTRPNLHRKSRRRLHFPNF 499
           ++T  GR   CER    H  Y R W  P++ +   + L F  F
Sbjct: 84  QRTLDGRLQVCERKGFPHVIYARLWRWPDIQKMEMKHLDFCRF 126


>SB_58559| Best HMM Match : AA_permease (HMM E-Value=1.5e-07)
          Length = 530

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
 Frame = -1

Query: 473 VAHLALEGASNVVVNDVTFNILRSKF--SVDLTLPKLSASSV--AVNGEATIFGRELAVA 306
           VA++ + GAS ++ ++     + + +   V   +P   A+S   AVNG     GR L VA
Sbjct: 332 VAYITVLGASGILESEAVAVSVGNMYLGPVKWIVPLFVAASTFGAVNGMVLTNGRLLYVA 391

Query: 305 SSGSLVVEDLRLVSTVSIRLLPSISIRELSAVL 207
           +  +L+   L ++       LPS+    L +V+
Sbjct: 392 ARDNLMPSLLAMIHVKRFTPLPSLLFTTLVSVI 424


>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
          Length = 1440

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 576 DAIDDVHNQLLDQILSFSLKVNF*GHSSDAGSESNKYKCE 695
           DAI+  HN+ +  ++     VN  G   D  +ESN ++ E
Sbjct: 349 DAIEQAHNRHVSNVVHLVPTVNQTGKDKDKDAESNDFRSE 388


>SB_51028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -1

Query: 338 ATIFGRELAVASSGSLVVEDLRLVSTVSIRLLPSISIRELSAVLTVG--NVESALKVVLF 165
           A+  GR+ A+  +GSL  E  + +    ++LL  +  +    VL  G  N++ A+   + 
Sbjct: 228 ASYHGRQNAIGGNGSLTDEKKKTIFRDLLKLLDEVCKKAKCHVLIGGDFNLKYAIAETVV 287

Query: 164 GEDVSERLN 138
            E V ER N
Sbjct: 288 TEVVQERSN 296


>SB_5714| Best HMM Match : CBM_X (HMM E-Value=1.9)
          Length = 975

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -3

Query: 690 ICTCYSRCQRRCCALKS*P*ERKTEFGRAIDCERHRSHHFRYPRAWTRPNLHRKSRRRLH 511
           + T  +R + +CC   +   +++ + GR + C R     +RY RAW R ++    R RL 
Sbjct: 11  VLTAPTRSRHQCCYRLNV--KKEVDVGRPL-CMRC----YRYARAWRREHMIPSVRERLE 63

Query: 510 --FPNF*HLQRIWHRSPLG 460
              P    +++ W   P G
Sbjct: 64  RSIPTVGRVKQEWVAGPTG 82


>SB_33889| Best HMM Match : zf-CCHC (HMM E-Value=2.1e-05)
          Length = 525

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
 Frame = -1

Query: 371 LSASSVAVNGEATIFGRELAVASSGSLVVEDLRLVS---TVSIRLLPSISIRELS-AVLT 204
           LSASSV    E    G   AV ++G  VV+ L LV+   T   +L   + + +LS  +L+
Sbjct: 318 LSASSVLEEPEEVTLGDGYAVEAAGKGVVK-LELVADGETKKCKLHDVLYVPKLSYNLLS 376

Query: 203 VGNVESALKVVLFGE 159
           V  V +A K V F E
Sbjct: 377 VSRVTNAGKAVEFNE 391


>SB_51046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 306 GYSQFPAKDGGLTVDGDRRGAELGEGKIDAE 398
           G  + P K+ G+ V+GD   AELGE   D E
Sbjct: 19  GVKEMP-KENGVLVNGDATAAELGEEDDDEE 48


>SB_30055| Best HMM Match : Histone (HMM E-Value=0.97)
          Length = 129

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 291 KASTTGYSQFPAKDGGLTVDGDRRGAELGEGK 386
           K  T G   FPA+DGGL V     G   G+ K
Sbjct: 52  KEQTNGRLDFPARDGGLLVVMTMSGRGKGKAK 83


>SB_40027| Best HMM Match : RVT_1 (HMM E-Value=3.8e-11)
          Length = 587

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 293 LVVEDLRLVSTVSIRLLPSISIRELSAVLTVGNVESALKVV 171
           L++ DLRL  T + + +   +I E+ +    GNVESA+  V
Sbjct: 438 LMINDLRLADTHTWKYVNDTTIAEIVSRGFPGNVESAVSAV 478


>SB_36412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 75  NLPDLVVVSF-EKFWKFVI-QSVIQPLGYVLAEENNFESGLNIANSKNGTELPNAD 236
           NL D+ +  F  K+ K +  QS+  PLG +  +EN  E  L+I    +G  LP+ D
Sbjct: 246 NLKDVCIKHFPHKYIKELAEQSIKVPLGVIFKDENTNEDMLHILQQFHG-YLPHLD 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,831,494
Number of Sequences: 59808
Number of extensions: 389059
Number of successful extensions: 1145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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