Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_A18
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42) 122 2e-28
SB_15482| Best HMM Match : LIM (HMM E-Value=0) 110 1e-24
SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43) 109 3e-24
SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40) 103 2e-22
SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16) 94 1e-19
SB_20426| Best HMM Match : LIM (HMM E-Value=3e-35) 79 2e-15
SB_31712| Best HMM Match : LIM (HMM E-Value=9e-26) 58 5e-09
SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22) 54 1e-07
SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 5e-07
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 48 5e-06
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 46 2e-05
SB_30367| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15) 41 8e-04
SB_13716| Best HMM Match : LIM (HMM E-Value=0) 40 0.002
SB_43770| Best HMM Match : PET (HMM E-Value=8.8e-24) 33 0.15
SB_20996| Best HMM Match : LIM (HMM E-Value=9e-22) 33 0.20
SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_59126| Best HMM Match : zf-A20 (HMM E-Value=4.4) 31 0.81
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 3.3
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 28 5.7
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14) 28 5.7
SB_44886| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06) 28 7.5
SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 7.5
SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1) 28 7.5
SB_42899| Best HMM Match : No HMM Matches (HMM E-Value=.) 24 8.5
SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_1883| Best HMM Match : LIM (HMM E-Value=2.20004e-42)
Length = 328
Score = 122 bits (295), Expect = 2e-28
Identities = 52/107 (48%), Positives = 65/107 (60%)
Frame = +2
Query: 329 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLFG 508
CVGC +I D+Y+++V+ WH CLKC C L TC+ DGK YCK Y FG
Sbjct: 102 CVGCEAKIVDRYLVKVS-GRAWHTKCLKCCLCSDELGREATCYTKDGKIYCKADYARQFG 160
Query: 509 TKCDKCGAXFSKNDFVMRAKTNIYHIDCFXCCACARQLIPGDEFALR 649
TKC +CG ND+V RAK +YH+ CF C C RQL G+EFAL+
Sbjct: 161 TKCARCGRSIHANDWVRRAKNCVYHLACFACDNCKRQLSTGEEFALK 207
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +2
Query: 329 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLFG 508
C CG IH +R A + +H AC C C++ L + DG CK Y
Sbjct: 163 CARCGRSIHANDWVRRAKNCVYHLACFACDNCKRQLSTGEEFALKDGHVLCKLHYLEALD 222
Query: 509 T 511
T
Sbjct: 223 T 223
>SB_15482| Best HMM Match : LIM (HMM E-Value=0)
Length = 349
Score = 110 bits (264), Expect = 1e-24
Identities = 48/111 (43%), Positives = 64/111 (57%)
Frame = +2
Query: 317 RLSLCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYT 496
R+++C GC I D+++++V D WH +CL+C CR L SC F D K YC+ Y
Sbjct: 42 RVNICTGCNEPIEDRFLMKVV-DEAWHESCLQCCICRSQLSRSC--FSKDRKLYCRTDYE 98
Query: 497 TLFGTKCDKCGAXFSKNDFVMRAKTNIYHIDCFXCCACARQLIPGDEFALR 649
+FGTKC C N+ VMRA N+YH+ CF C C L G EFAL+
Sbjct: 99 KVFGTKCSGCKKTIPANELVMRALGNVYHLHCFVCTMCGHILEKGQEFALK 149
>SB_30891| Best HMM Match : LIM (HMM E-Value=4.40008e-43)
Length = 511
Score = 109 bits (261), Expect = 3e-24
Identities = 46/110 (41%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Frame = +2
Query: 323 SLCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTL 502
++C GCG +I +++ L +A D EWHA CLKC +C LD TCF DG C+ Y
Sbjct: 246 AVCAGCGSRILERFYL-MAVDQEWHADCLKCSDCELRLDNELTCFSKDGVILCREDYYRR 304
Query: 503 FGTK-CDKCGAXFSKNDFVMRAKTNIYHIDCFXCCACARQLIPGDEFALR 649
F K C C S + VMRA+ +YH++CF C C R L G+ F +R
Sbjct: 305 FSVKKCSSCSQAISSKELVMRARDQVYHVNCFACDRCKRMLATGEYFGMR 354
>SB_2217| Best HMM Match : LIM (HMM E-Value=1.2e-40)
Length = 434
Score = 103 bits (246), Expect = 2e-22
Identities = 45/103 (43%), Positives = 61/103 (59%)
Frame = +2
Query: 329 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLFG 508
C GC I D+++L+V D WHA C++C +C+ L E C F +GK +CK + +G
Sbjct: 5 CAGCQLPIADKFLLKVL-DGVWHAQCVQCSDCKCPLTERC--FSREGKLFCKTDFYRRYG 61
Query: 509 TKCDKCGAXFSKNDFVMRAKTNIYHIDCFXCCACARQLIPGDE 637
TKC C S ND V RAK ++H+DCF C C RQ+ GDE
Sbjct: 62 TKCSGCDQGISPNDMVRRAKHLVFHVDCFVCSYCKRQITTGDE 104
>SB_20327| Best HMM Match : LIM (HMM E-Value=4.9e-16)
Length = 339
Score = 93.9 bits (223), Expect = 1e-19
Identities = 39/50 (78%), Positives = 42/50 (84%)
Frame = +2
Query: 500 LFGTKCDKCGAXFSKNDFVMRAKTNIYHIDCFXCCACARQLIPGDEFALR 649
LFGTKC KC FSKNDFVMRA+ IYHIDCF C AC+RQL+PGDEFALR
Sbjct: 79 LFGTKCAKCSLNFSKNDFVMRARNKIYHIDCFRCVACSRQLVPGDEFALR 128
>SB_20426| Best HMM Match : LIM (HMM E-Value=3e-35)
Length = 160
Score = 79.4 bits (187), Expect = 2e-15
Identities = 39/108 (36%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Frame = +2
Query: 326 LCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFL-DESCTCFVXDGKTYCKXXYTTL 502
LC C I D+Y+L+ WH CLKC+ C L D + + CK Y L
Sbjct: 16 LCRSCNEPISDKYVLQALGSY-WHEGCLKCECCDSRLGDIGSSLYSKANLILCKRDYLRL 74
Query: 503 FGTK--CDKCGAXFSKNDFVMRAKTNIYHIDCFXCCACARQLIPGDEF 640
FG C C + + VMRA+ N YHI+CF C C ++L+ G+ F
Sbjct: 75 FGIPGVCSHCNKPIAAFELVMRARNNAYHIECFGCQRCRKRLVVGEAF 122
>SB_31712| Best HMM Match : LIM (HMM E-Value=9e-26)
Length = 481
Score = 58.4 bits (135), Expect = 5e-09
Identities = 24/50 (48%), Positives = 29/50 (58%)
Frame = +2
Query: 500 LFGTKCDKCGAXFSKNDFVMRAKTNIYHIDCFXCCACARQLIPGDEFALR 649
+FGTKC C N+ VMRA N+YH+ CF C C L G EFAL+
Sbjct: 2 VFGTKCSGCKKTIPANELVMRALGNVYHLHCFVCTMCGHILEKGQEFALK 51
>SB_38221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/98 (28%), Positives = 41/98 (41%)
Frame = +2
Query: 329 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLFG 508
C CG + + +L WH AC C C + L S V DG YC Y +
Sbjct: 463 CASCGEPLLEGGVLYNGET--WHKACFSCYFCHRSL-ASAAFSVRDGCRYCMECYGKFYA 519
Query: 509 TKCDKCGAXFSKNDFVMRAKTNIYHIDCFXCCACARQL 622
+C+ C ++ ++N +H +CF C C R L
Sbjct: 520 KQCEICLKAIVGGEYYTLEESN-FHKECFMCSRCGRSL 556
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/80 (23%), Positives = 27/80 (33%)
Frame = +2
Query: 383 DLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLFGTKCDKCGAXFSKNDFVMR 562
D WH C C CR+ L + C Y + +C CG +
Sbjct: 358 DRHWHDKCFICDICRRPLKSDGKFTFYRDQILCNNCYVANYQKECFACGQMIDSGASRLE 417
Query: 563 AKTNIYHIDCFXCCACARQL 622
N +H +CF C C +
Sbjct: 418 YSGNFWHENCFRCANCGEAI 437
Score = 32.7 bits (71), Expect = 0.26
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Frame = +2
Query: 374 VAPDLEWHAACLKCQECRQFLDESCT--CFVXDG-KTYCKXXYTTLFGTKCDKCGAXFS- 541
VA + WH +CQ C D S T F+ G K C + + +C+ C
Sbjct: 293 VAMNKNWHLGHFQCQTC----DHSITGRQFIVRGDKPVCTDCFKDSYAHECEACHQKIGP 348
Query: 542 KNDFVMRAKTNIYHIDCFXCCACARQLIPGDEF 640
++ + +H CF C C R L +F
Sbjct: 349 ESRDISSDDDRHWHDKCFICDICRRPLKSDGKF 381
>SB_22219| Best HMM Match : LIM (HMM E-Value=8.2e-22)
Length = 163
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/98 (28%), Positives = 41/98 (41%)
Frame = +2
Query: 329 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLFG 508
C CG + + +L WH AC C C + L S V DG YC Y +
Sbjct: 51 CASCGEPLLEGGVLYNGET--WHKACFSCYFCHRSL-ASAAFSVRDGCRYCMECYGKFYA 107
Query: 509 TKCDKCGAXFSKNDFVMRAKTNIYHIDCFXCCACARQL 622
+C+ C ++ ++N +H +CF C C R L
Sbjct: 108 KQCEICLKAIVGGEYYTLEESN-FHKECFMCSRCGRSL 144
>SB_9083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/69 (37%), Positives = 31/69 (44%)
Frame = +2
Query: 320 LSLCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTT 499
L C GCG I L +A + +WH C C +C L S DGK YC+ Y
Sbjct: 86 LHTCAGCGEAIKGSQAL-LALEKQWHLWCFSCTKCHCLL--SLEYMGMDGKPYCEKDYQE 142
Query: 500 LFGTKCDKC 526
LFG C C
Sbjct: 143 LFGVTCAAC 151
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +2
Query: 476 YCKXXYTTLFGTKCDKCGAXFSKNDFVMRAKTNIYHIDCFXCCACARQLIPGDE 637
YCK Y +G KCD C + K +H CF C +C + P D+
Sbjct: 6 YCKDDYQNQYGKKCDSCQLYLEGEIISIHGKN--FHEACFACNSCRQPFPPSDK 57
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/108 (24%), Positives = 43/108 (39%)
Frame = +2
Query: 326 LCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLF 505
+CV C I + +H+ C C C + L S +G+ C+ Y +
Sbjct: 236 VCVKCNQVIKTSSVQHAGST--YHSECFTCHHCDKPLAGS-PFTKQEGRNVCQNCYRERY 292
Query: 506 GTKCDKCGAXFSKNDFVMRAKTNIYHIDCFXCCACARQLIPGDEFALR 649
+C C N + +H +CF CC C + L G++F +R
Sbjct: 293 AKRCGACHNLIEGNTKFVAYDEKYFHRECFTCCKCNKPL-AGEKFRIR 339
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/99 (26%), Positives = 36/99 (36%)
Frame = +2
Query: 326 LCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLF 505
+C C G +H C C EC+Q + S D + C + + F
Sbjct: 175 VCAACNGDFAPGEKKVGYQSKTFHDKCFICDECKQPIG-SKQFIRRDERRLCNNCFDSKF 233
Query: 506 GTKCDKCGAXFSKNDFVMRAKTNIYHIDCFXCCACARQL 622
C KC K V A + YH +CF C C + L
Sbjct: 234 AKVCVKCNQVI-KTSSVQHAGST-YHSECFTCHHCDKPL 270
Score = 35.9 bits (79), Expect = 0.028
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 9/114 (7%)
Frame = +2
Query: 323 SLCVGCGGQIH--DQYIL--RVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXX 490
S C C G ++ D + R+ PD WH C C+E + L + C D + YC
Sbjct: 78 STCKRCNGPVNPGDMALFAERLGPDSCWHVKCFTCEEDGELLVDLIYC-SKDDEIYCCRH 136
Query: 491 YTTLFGTKCDKCGAXFSKNDFVMRAKTNIYH-----IDCFXCCACARQLIPGDE 637
+ +C G F ++ + I H C AC PG++
Sbjct: 137 WGEKLKPRC--AGCEEMNEGFTLKDEKLICHGCRGINPSKVCAACNGDFAPGEK 188
>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 46.4 bits (105), Expect = 2e-05
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 515 CDKCGAXFSKNDFVMRAKTNIYHIDCFXCCACARQLIPGDEF 640
C C + VM+ +YH+ CF C C QL+PGD F
Sbjct: 708 CAVCAKLIPATELVMKVLGKVYHLHCFTCTTCHNQLVPGDRF 749
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 2/101 (1%)
Frame = +2
Query: 329 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLFG 508
C C I + A D WH C EC L + D K YC + +L+
Sbjct: 143 CAACDEIIFAEQCTE-AEDSCWHVQHFCCFECDCPLG-GMRYVMRDNKPYCCHCFESLYA 200
Query: 509 TKCDKCGAXFSKNDFVMRAKTNIYHI--DCFXCCACARQLI 625
CD CG + M +H +CF CC C + L+
Sbjct: 201 EFCDSCGEPIEPDASQMAHNGQHWHATNECFSCCTCGKALL 241
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/94 (25%), Positives = 34/94 (36%)
Frame = +2
Query: 329 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLFG 508
CV G Y R WHA+C C C++ L + F D K YC +
Sbjct: 84 CVTAGSMA--VYASRAGQHTCWHASCFICTTCKELLVD-LIYFYKDSKVYCGRHHAETLK 140
Query: 509 TKCDKCGAXFSKNDFVMRAKTNIYHIDCFXCCAC 610
+C C A+ + +H+ F C C
Sbjct: 141 PRCAACDEIIFAEQ-CTEAEDSCWHVQHFCCFEC 173
>SB_30367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 1/108 (0%)
Frame = +2
Query: 329 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLFG 508
CV C I + +H+ C C CR+ L T +G C Y +
Sbjct: 61 CVACRQYIEGTVKFVTRDEGTYHSDCFVCSRCRKPLAGK-TFTEHEGSWVCDDCYHDRYA 119
Query: 509 TKCDKCGAXFSKNDFVMRAKTNIYHIDCFXC-CACARQLIPGDEFALR 649
+C+ C N ++ +YH +CF C R+ + G +FAL+
Sbjct: 120 KRCNMCHQSLEANVEFVKYDEKLYHNECFVCQNPRCRKPLSGAKFALK 167
>SB_57744| Best HMM Match : LIM (HMM E-Value=4.3e-15)
Length = 85
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/48 (41%), Positives = 26/48 (54%)
Frame = +2
Query: 371 RVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLFGTK 514
R+A +WH +CL C+ C + LD S DG+ YCK Y FG K
Sbjct: 23 RLAIGKKWHKSCLTCKCCNKSLD-STNLADKDGEIYCKGCYGKNFGPK 69
>SB_13716| Best HMM Match : LIM (HMM E-Value=0)
Length = 401
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/95 (26%), Positives = 32/95 (33%)
Frame = +2
Query: 326 LCVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLF 505
+C C I Q + WH C C L F DGK YC+ Y F
Sbjct: 281 MCAACNKPIIGQVCTALGKT--WHPEHFACVACEAPLGTQ-NFFERDGKPYCERDYHDTF 337
Query: 506 GTKCDKCGAXFSKNDFVMRAKTNIYHIDCFXCCAC 610
+C C D + A +H + F C C
Sbjct: 338 APRCAYCNGPIL--DSCVTALDQTWHPEHFVCAEC 370
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +2
Query: 329 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLFG 508
C C G I D + A D WH C EC ++ DGK +C+ Y +F
Sbjct: 341 CAYCNGPILDSCV--TALDQTWHPEHFVCAECGNPFGDT-GFHERDGKPFCREDYYAMFA 397
Query: 509 TKC 517
+C
Sbjct: 398 PRC 400
>SB_43770| Best HMM Match : PET (HMM E-Value=8.8e-24)
Length = 251
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +2
Query: 323 SLCVGCGGQIH--DQYIL--RVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYC 481
S C C G ++ D + R+ PD WH C C+E + L + C D + YC
Sbjct: 191 STCKRCNGPVNPGDMALFAERLGPDSCWHVKCFTCEEDGELLVDLIYC-SKDAEIYC 246
>SB_20996| Best HMM Match : LIM (HMM E-Value=9e-22)
Length = 81
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +2
Query: 455 FVXDGKTYCKXXYTTLFGTKCDKCGAXFSKNDFVMRAKTNIYHIDCFXCCACARQLIPG 631
F DG+ YC+ Y GT C C + + A +H + F C C +QL G
Sbjct: 5 FDHDGRPYCEMHYHAKRGTLCYSCQKPITGR--CITAMHRKFHPEHFVCAFCLKQLNKG 61
>SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/66 (24%), Positives = 26/66 (39%)
Frame = +2
Query: 329 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLFG 508
C CG + D+ + + WH C +C + + G YC+ Y L+G
Sbjct: 81 CFCCGRPVEDRVVHALGK--AWHVEHFVCAKCEKPF-YGHRYYERKGLAYCETHYNELYG 137
Query: 509 TKCDKC 526
C +C
Sbjct: 138 DICFEC 143
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Frame = +2
Query: 377 APDLEWHAACLKCQECRQFLDESCTCFVXD-GKTYC-KXXYTTLFGT-------KCDKCG 529
A WH C +C+ C L + T FV + G TY + + G C CG
Sbjct: 28 AMQANWHPDCFRCEICNDCLAD--TGFVKNAGSTYIPEGEHIMYMGDPVHPWHYNCFCCG 85
Query: 530 AXFSKNDFVMRAKTNIYHIDCFXCCACAR 616
D V+ A +H++ F C C +
Sbjct: 86 R--PVEDRVVHALGKAWHVEHFVCAKCEK 112
>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 329 CVGCGGQIHDQYILRVAPDLE-WHAACLKCQECRQFLDESCTCFVXD-GKTYCKXXY 493
C CG + + RVA + +H AC C C +L+ CFV D K YC Y
Sbjct: 245 CDSCGKSV--DILERVAVENHVFHKACFVCAICNVWLNHFNYCFVPDHDKFYCVQHY 299
>SB_59126| Best HMM Match : zf-A20 (HMM E-Value=4.4)
Length = 860
Score = 31.1 bits (67), Expect = 0.81
Identities = 22/58 (37%), Positives = 30/58 (51%)
Frame = +1
Query: 154 RGFARDFERWFSVVVSDGDGQRRWWRADTVPTRHDAPSQYHGHFISR*NDAKKAPALV 327
RG R +WF+ V+SD + R W A VP HDA Y + D K+APA++
Sbjct: 72 RGIERRARKWFAPVLSDSAARVRDWVARGVP-GHDA---YIEEILDSMRD-KEAPAVL 124
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 404 CLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLFGTKCDK 523
CLKC C + S C V DG+ C +T+ T C +
Sbjct: 2040 CLKCN-CEEIGSLSLQCRVSDGQCPCIKGSSTVINTSCPR 2078
>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 329 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTYC 481
C+ CG +++ L VA +H AC +C C L F + +++C
Sbjct: 611 CLICGERVYLMERL-VAERRLFHRACFRCSRCNSSLRAGTYTFFPESESFC 660
>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1101
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 404 CLKCQECRQFLDESCTCFVXDGKTYCKXXYTTLFGTKCDKCGAXFSKN 547
C +C EC D SCT +G C Y G C++C F +N
Sbjct: 318 CERC-ECHSHAD-SCTYSQQEGYGTCDDCYHNTEGHFCERCKDKFYRN 363
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 440 RRGTAGIPDTLGRPRATPSQGPPGGCTGRGSD 345
+RG G P G P T + GPPG RG D
Sbjct: 597 QRGEPGDPGRPGLPGQTGADGPPGMIGPRGPD 628
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -3
Query: 434 GTAGIPDTLGRPRATPSQGPPGGCTGRGSDLRSRRTTRAGA 312
GTAG P G+P A S G G +G RT R G+
Sbjct: 175 GTAGPPGVRGQPGAIGSPGDAGRAGPQGPQGAEGRTGRRGS 215
>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
Length = 446
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 329 CVGCGGQIHDQYILRVAPDLEWHAACLKCQECRQFLDESCTCFVXDGKTY 478
C CG ++ + + + ++H C C++CR+ LD S DGK +
Sbjct: 44 CPRCGDNVYHAEEVSME-NHKFHKKCFSCKDCRKKLD-STNAASHDGKCH 91
>SB_44886| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-06)
Length = 406
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Frame = +2
Query: 392 WHAACLKCQECRQFLDESCT--CFVXDGKTYCKXXYTTLFGTKCDKCGAXFSKNDF 553
+H A L C C ++ CF K Y T KC KC A F NDF
Sbjct: 347 FHQARLTCPCCNTRKKDAILTKCFHVFCYECLKTRYDTR-QRKCPKCNATFGSNDF 401
>SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 927
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Frame = +2
Query: 512 KCDKCGAXFS-----KNDFVMRAKTNIYHIDCFXCCACARQ 619
KCD+CG FS K V+ ++ Y C CC C Q
Sbjct: 244 KCDECGKCFSESGNLKKHLVIHSRRKPYR--CDECCECFTQ 282
>SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)
Length = 674
Score = 27.9 bits (59), Expect = 7.5
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Frame = +2
Query: 377 APDLEWHAACLKCQECRQFLDESCTCFVXD----GKTYCKXXYTTLFGTKCDKCGAXFSK 544
AP +W + C EC ++ + TC+ G+ K + + KC+ CG K
Sbjct: 309 APRWDW----MYCGECNKYF-RTLTCYQNHKEIRGRRDQKWTFCQRY-YKCNDCGKSVDK 362
Query: 545 NDFVMRAKTNIYHIDCFXCCACARQLIPGD 634
+ + + H+ CC +QL+P D
Sbjct: 363 S---AQREDGDEHVCGEYCCNICKQLVPQD 389
>SB_42899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 23.8 bits (49), Expect(2) = 8.5
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = +2
Query: 287 SHVEMMPKKLRLSLCVGCGGQIHDQYILRVAPDLEWHAACLKCQEC 424
SHV K + +C CG Y L+ ++ A C++C
Sbjct: 388 SHVRRTHTKEKPCICEYCGKAFAQSYELKFHINMHTGAKPYTCEKC 433
Score = 22.2 bits (45), Expect(2) = 8.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 515 CDKCGAXFSKNDFVMRAKTN 574
C+KCG FS R +TN
Sbjct: 430 CEKCGRGFSSPSSRDRHRTN 449
>SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 458 RSTCRIRRGTAGIPDTLGRPRATPSQGPPGGC 363
RS C+ RRG + LG PSQG G C
Sbjct: 353 RSECKPRRGHIQVKHKLGCVFTLPSQGCHGEC 384
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,804,691
Number of Sequences: 59808
Number of extensions: 443282
Number of successful extensions: 1574
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1540
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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