SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_A06
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              256   9e-69
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)             244   5e-65
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             192   2e-49
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)             161   5e-40
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         91   1e-18
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         90   2e-18
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         83   3e-16
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   4e-16
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         81   6e-16
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          72   4e-13
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   5e-11
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            53   2e-07
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         40   0.002
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)                     36   0.022
SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)        34   0.088
SB_24760| Best HMM Match : PT (HMM E-Value=0.17)                       31   0.82 
SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.82 
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)                    31   1.1  
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)                       29   4.4  
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)           28   5.8  
SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)                    28   5.8  
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5)                    28   7.6  

>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score =  256 bits (628), Expect = 9e-69
 Identities = 114/162 (70%), Positives = 133/162 (82%)
 Frame = +2

Query: 80  PRVFFDVTVDDAPLGKIVIELXSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQ 259
           PRVFFD+T+ +   G+IV+EL SDV P T ENFR LCT EKGFGYKGS FHR+IP FM Q
Sbjct: 137 PRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQ 196

Query: 260 GGDFTNHNGTGGKSIYGNKFEXENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSXLD 439
           GGDFT HNGTGGKSIYG KFE ENF LKHTG GVLSMAN+G +TNGSQFF+TT KT  LD
Sbjct: 197 GGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTDWLD 256

Query: 440 GRHVVFGNVVEGMEVVKQIETFGSQSGKTSXRIVIKDCGXIA 565
           G+HVVFGNV+EG +VV+++E  GSQSGK S ++VI DCG ++
Sbjct: 257 GKHVVFGNVIEGFDVVRKMEAVGSQSGKASKKVVIDDCGELS 298


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score =  244 bits (597), Expect = 5e-65
 Identities = 111/158 (70%), Positives = 127/158 (80%)
 Frame = +2

Query: 89  FFDVTVDDAPLGKIVIELXSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGD 268
           +FD+ +  AP G+IV+EL  DV PKT ENFRALCTGEKGFGYKGS FHRVIP FM QGGD
Sbjct: 6   YFDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGGD 65

Query: 269 FTNHNGTGGKSIYGNKFEXENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSXLDGRH 448
           FT  +GTGGKSIYG KF  ENF LKHTGPG+LSMANAG  TNGSQFF+ T KTS LDG+H
Sbjct: 66  FTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKTSWLDGKH 125

Query: 449 VVFGNVVEGMEVVKQIETFGSQSGKTSXRIVIKDCGXI 562
           VVFG+V +GM+VVK+IE  GS SGKTS ++VI D   +
Sbjct: 126 VVFGSVKDGMDVVKKIEKVGSDSGKTSKKVVIADSASV 163


>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  192 bits (468), Expect = 2e-49
 Identities = 87/139 (62%), Positives = 106/139 (76%)
 Frame = +2

Query: 83  RVFFDVTVDDAPLGKIVIELXSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQG 262
           +V+ DV++   P G++++ L  D  PKT  NF AL   E+GFGYK SIFHRVI NFM+QG
Sbjct: 27  KVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFMIQG 86

Query: 263 GDFTNHNGTGGKSIYGNKFEXENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSXLDG 442
           GDFTN +GTGG SIYG  F+ ENF LKH GPG L MANAG +TNGSQF+ITT+KTS LDG
Sbjct: 87  GDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDG 146

Query: 443 RHVVFGNVVEGMEVVKQIE 499
            H  FG V+EGM+VV++IE
Sbjct: 147 SHTCFGKVLEGMDVVRRIE 165


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =  161 bits (391), Expect = 5e-40
 Identities = 89/152 (58%), Positives = 102/152 (67%), Gaps = 18/152 (11%)
 Frame = +2

Query: 83  RVFFDVTVDDAPLGKIVIELXSDV------TPKTCE-----NFRAL-----CT--GEKGF 208
           +VFFD+T+     G+I I L   +        +  E     NFR       CT   +KGF
Sbjct: 28  KVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIGTNFRYFDTYYCCTIESQKGF 87

Query: 209 GYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEXENFTLKHTGPGVLSMANAGAD 388
           GYK SIFHRVI +FM+QGGDFT  +GTGGKSIYG KF  ENF L+H G G LSMANAG D
Sbjct: 88  GYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADENFKLQHYGAGWLSMANAGKD 147

Query: 389 TNGSQFFITTVKTSXLDGRHVVFGNVVEGMEV 484
           TNGSQFFITTVKT  LDGRHVVFG V++GMEV
Sbjct: 148 TNGSQFFITTVKTPWLDGRHVVFGKVLKGMEV 179


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 40/75 (53%), Positives = 54/75 (72%)
 Frame = +2

Query: 341 KHTGPGVLSMANAGADTNGSQFFITTVKTSXLDGRHVVFGNVVEGMEVVKQIETFGSQSG 520
           +H  PG+LSMAN+G +TNGSQFFITTV T  LDGRHVVFG V++GM+VV+++E       
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELEATPVDDS 247

Query: 521 KTSXRIVIKDCGXIA 565
                 +I++CG +A
Sbjct: 248 SPKSPCIIEECGELA 262


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 43/73 (58%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
 Frame = +2

Query: 281 NGTGGKSIYGNKFEXE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSXLDGRHVVF 457
           +GTGG+SI+G +FE E +  L+H  P  +SMANAG +TNGSQFFIT V T  LD +H VF
Sbjct: 2   DGTGGESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVF 61

Query: 458 GNVVEGMEVVKQI 496
           G VV+GM+V +QI
Sbjct: 62  GRVVKGMDVAQQI 74


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 43/95 (45%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
 Frame = +2

Query: 281 NGTGGKSIYGNKFEXENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSXLDGRHVVFG 460
           NGTGG+SIYG  F  E F  KH  P +LSMAN G +TNGSQFFI           HVVFG
Sbjct: 25  NGTGGESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFG 74

Query: 461 NVVEGMEVVKQIETF-GSQSGKTSXRIVIKDCGXI 562
           +V++G E+V+QIE+   ++  + +  + + +CG +
Sbjct: 75  HVIQGEELVRQIESLPTNEKNRPNADVKVSNCGEL 109


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 38/65 (58%), Positives = 47/65 (72%)
 Frame = +2

Query: 368 MANAGADTNGSQFFITTVKTSXLDGRHVVFGNVVEGMEVVKQIETFGSQSGKTSXRIVIK 547
           MANAG DTNGSQFFITTVKTS LDG+HVVFG V+EGM+VV+++E    +        +I 
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLENVNVKGSTPVKTCMID 60

Query: 548 DCGXI 562
           D G +
Sbjct: 61  DSGTL 65


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 37/93 (39%), Positives = 56/93 (60%)
 Frame = +2

Query: 284 GTGGKSIYGNKFEXENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSXLDGRHVVFGN 463
           G GG+S+YG  FE E+F++ H   GV+ MAN G  TNGSQF+IT      +D ++V FG 
Sbjct: 46  GIGGESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQ 105

Query: 464 VVEGMEVVKQIETFGSQSGKTSXRIVIKDCGXI 562
           V+EG+ V+  +E   + + +      + DCG +
Sbjct: 106 VIEGLNVLDVLEGQETFNERPKVECRVADCGVL 138


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 32/46 (69%), Positives = 40/46 (86%)
 Frame = +2

Query: 359 VLSMANAGADTNGSQFFITTVKTSXLDGRHVVFGNVVEGMEVVKQI 496
           +LSMANAG  TNGSQFF+ T KTS LDG+HVVFG+V +GM+VVK++
Sbjct: 2   ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 52/132 (39%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
 Frame = +2

Query: 119 LGKIVIELXSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGK 298
           LG+I IEL +D  P +  NF A    + G+ Y G+ FHRVIP FM+QGG F + +     
Sbjct: 32  LGEIEIELDADKAPISTANFLAYV--DSGY-YAGTQFHRVIPGFMVQGGGF-DADMQQKD 87

Query: 299 SIYGNKFEXENFTLKHTGPGVLSMANAGA-DTNGSQFFITTVKTSXLDG-----RHVVFG 460
           +    K E +N    H   G L+MA     D+  SQFFI     + LD       + VFG
Sbjct: 88  TQAPIKNEADNGL--HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVFG 145

Query: 461 NVVEGMEVVKQI 496
            VV+GM+VV +I
Sbjct: 146 KVVKGMDVVDKI 157


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 8/46 (17%)
 Frame = +2

Query: 122 GKIVIELXSDVTPKTCENFRALCTGEKGFG--------YKGSIFHR 235
           G+++ EL +D  PKT ENFRALCTGEKG G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +2

Query: 344 HTGPGVLSMANAGADTNGSQFFITTVKTSXLDGRHVVFG 460
           H   G +SMAN G ++NGSQFFI   K   LD ++ +FG
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFG 339


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 26/65 (40%), Positives = 35/65 (53%)
 Frame = +2

Query: 119 LGKIVIELXSDVTPKTCENFRALCTGEKGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGK 298
           +G I IEL    TPK C NF  LC   +G+ Y  +IFHR++     +GG+  N  G  G 
Sbjct: 12  VGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIV-----KGGE--NIYGQSGF 61

Query: 299 SIYGN 313
            + GN
Sbjct: 62  KVTGN 66


>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
          Length = 175

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 14/40 (35%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +2

Query: 446 HVVFGNVVEGMEVVKQIETF-GSQSGKTSXRIVIKDCGXI 562
           HVVFG+V++G E+V+QIE+   ++  + +  + + +CG +
Sbjct: 3   HVVFGHVIQGEELVRQIESLPTNEKNRPNADVKVSNCGEL 42


>SB_24028| Best HMM Match : DNA_photolyase (HMM E-Value=1.3e-39)
          Length = 432

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 26/104 (25%), Positives = 45/104 (43%)
 Frame = +3

Query: 18  ALSLWWFCKLLTLLIPAKCLYHEYSSTSLLTMPHWEKLLLS*XVTSLPRRVKTSVPCALA 197
           ALS    C+L  L     C      S +L T    E   LS  V+   + + T+V C L 
Sbjct: 326 ALSTTVSCQLKALSTTVSC-----QSKALSTTVSCELKALSTTVSCELKALSTTVSCQLK 380

Query: 198 RKASVTRAPFSIVSSPISCCKEGTSPTITALGESPSTAISLXTR 329
             ++        +S+ +SC  +  S T++   ++ ST +S  ++
Sbjct: 381 ALSTTVSCELKALSTTVSCQSKALSTTVSCQSKALSTTVSCQSK 424



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/79 (22%), Positives = 37/79 (46%)
 Frame = +3

Query: 93  STSLLTMPHWEKLLLS*XVTSLPRRVKTSVPCALARKASVTRAPFSIVSSPISCCKEGTS 272
           S +L T    +   LS  V+   + + T+V C L   ++        +S+ +SC  +  S
Sbjct: 324 SKALSTTVSCQLKALSTTVSCQSKALSTTVSCELKALSTTVSCELKALSTTVSCQLKALS 383

Query: 273 PTITALGESPSTAISLXTR 329
            T++   ++ ST +S  ++
Sbjct: 384 TTVSCELKALSTTVSCQSK 402


>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
          Length = 422

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 18/46 (39%), Positives = 19/46 (41%)
 Frame = -2

Query: 486 TTSMPSTTFPKTTCLPSXQEVLTVVMKNWEPLVSAPALAMERTPGP 349
           TT  PST  P T   PS  E +T     WEP    P       PGP
Sbjct: 34  TTGEPSTWEPMTGA-PSTWEPMTGAPSTWEPWTDGPGPYPTDGPGP 78



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 459 PKTTCLPSXQEVLTVVMKNWEPLVSAPALAMERTPGP 349
           P TT  PS  E +T     WEP+  AP+     T GP
Sbjct: 32  PFTTGEPSTWEPMTGAPSTWEPMTGAPSTWEPWTDGP 68


>SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 489 LTTSMPSTTFPKTTCLPSXQEVLTVVMKNWEPLVSAPALAMERTPGP 349
           L+ +  +  FP TT  P   +  T  +   EPL+  P    +R P P
Sbjct: 13  LSATQLTAAFPTTTTTPVTTQTTTTDVSRTEPLIELPTAQEKRKPCP 59


>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
          Length = 885

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +2

Query: 113 APLGKIVIELXSDVTPKTCENFRALCTG 196
           AP   I+I L S V+PKT E+ R LC G
Sbjct: 569 APKIDIIIALDSGVSPKTFEDERQLCAG 596


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 192 VHRARKFSHVLGVTSLXSS--ITIFPSGASSTVTSKNTRGRDILPV 61
           + +  KF+H+ G+ S  S    T+F     +T T   TR RD++ +
Sbjct: 168 IQQLHKFTHIHGMLSTSSRGRYTLFRGQYDTTATQIYTRSRDVIDI 213


>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
          Length = 259

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = -2

Query: 462 FPKTTCLPSXQE-----VLTVVMKNWEPLVSAPALAMERTPGP 349
           FP+ + LP   E     +LT++++N  P ++APA   +  P P
Sbjct: 81  FPQPSLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123


>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
          Length = 1207

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 154 DVTXQL-NNNFSQWGIVNSDVEEYSW*RHFAGISNVSNLQNHHNDNA 17
           DV   L     S WGI + D+E+  W  +   I+    L++ H D+A
Sbjct: 90  DVCSTLFQEELSYWGINDRDMEQCCWAHYKRQINTEETLKSFHLDSA 136


>SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)
          Length = 674

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 198 RKASVTRAPFSIVSSPISCCKEGTSPTITALGESP 302
           +K    R   S V    SC +EG SPT T+ G++P
Sbjct: 276 KKPFSNREAHSCVELCRSCVREGCSPTPTSRGDAP 310


>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1110

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -2

Query: 462 FPKTTCLPSXQE-----VLTVVMKNWEPLVSAPALAMERTPGP 349
           FP+   LP   E     +LT++++N  P ++APA   +  P P
Sbjct: 81  FPQPPLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123


>SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5)
          Length = 128

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 183 PCALARKASVTRAPFSIVSSPISCCKE-GTSPTITA-LGESPST 308
           PCALA   SV+  P S VSS     +  G S TI+A    SP T
Sbjct: 48  PCALATAPSVSEVPASTVSSSSPLRRSPGPSGTISASTSGSPRT 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,806,766
Number of Sequences: 59808
Number of extensions: 466180
Number of successful extensions: 1380
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -