Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B04
         (898 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   1e-22
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        36   0.034
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.7  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score =  103 bits (248), Expect = 1e-22
 Identities = 54/112 (48%), Positives = 66/112 (58%)
 Frame = +3

Query: 126 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 305
           M S +ELACVYSALIL DDDVA+T +KI T++KAA ++VEP+WPGLFAKAL+G N+ DLI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 306 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 461
             + +G                                   SDDDMGFGLFD
Sbjct: 61  --LSAGAPGAGGAVAAAPAAGGEAKAEEKKEEAKKEESEEESDDDMGFGLFD 110


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 36.3 bits (80), Expect = 0.034
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 305 DQVTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIIHQDESR 159
           DQ+  I+ F+  G++ WP +  + S R + GG+ +      II  DESR
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGSAVLQ----IICIDESR 146


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 429 SDDDMGFGLFD 461
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,369,860
Number of Sequences: 59808
Number of extensions: 268751
Number of successful extensions: 549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)