Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B03
         (908 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33130| Best HMM Match : GSHPx (HMM E-Value=1.3e-15)                 31   1.3  
SB_22384| Best HMM Match : HLH (HMM E-Value=2.7e-12)                   29   3.9  
SB_42347| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)                  29   6.9  
SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)           29   6.9  

>SB_33130| Best HMM Match : GSHPx (HMM E-Value=1.3e-15)
          Length = 194

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 616 ECSRPEGLECSDNTHAVADVIFMPLRVKDTKWNWEVLIVTYDGK 747
           +C  P+G+   ++     D+I+ P++  D  WN+E  ++ + GK
Sbjct: 115 QCPSPDGMIMGNHD----DIIWSPVKSGDISWNFEKFLIDHHGK 154


>SB_22384| Best HMM Match : HLH (HMM E-Value=2.7e-12)
          Length = 323

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +1

Query: 235 PEYIQKPDNLLLPENISSLWKWLKFFGPKKNLIDSVTAHKENHQKWHIALG--DEGKVIA 408
           P YI++ +N   P   +  W+      P  + ++  T+  E H +  +  G  DE + I+
Sbjct: 20  PPYIKEDENFFFPNPGNEFWETFCLLTPPLSPVNGTTSEIEKHLQDAVPSGPLDELREIS 79

Query: 409 VLTDNILEI 435
             T+   EI
Sbjct: 80  RFTEEAREI 88


>SB_42347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -1

Query: 680 NITSATA*VLSEHSKPSGLEHSIGILK--RFEAVKSKKPTTPFPYARTTKEQ 531
           +I S    +L++  +PSGL HS+      RF+      P T  P + +  E+
Sbjct: 62  SIKSTNGKILTDLERPSGLHHSVKDTNTLRFDCASGPLPNTESPVSESQGEE 113


>SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)
          Length = 584

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
 Frame = +1

Query: 454 YATIAARTTVNRDPYSQWR-------KLVWSPDCSFVVLAYGNGVVGFFDLTASNLFNI 609
           Y+  + ++   R+P  +W        +  +SPDC  + L   +G +  FD  A  L+ +
Sbjct: 253 YSIHSVKSKTVRNPVCKWNVGEGGINEFSFSPDCKHIALVTQDGYLRVFDFDAQTLYGV 311


>SB_26360| Best HMM Match : PKD_channel (HMM E-Value=1.3e-30)
          Length = 3015

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +1

Query: 469  ARTTVNRDPYS-QWRKLVWSPDCSFVVLAYGNGVVGFFDLTASNLFNIPIECSRPEGLEC 645
            A  T+N  P    WR+L+     SF+V+  G G+V  F  +      +  + S   G  C
Sbjct: 1580 ADPTINVGPLKFSWRQLMVGIQSSFIVVPVGLGIVALFQNSRQTRSTVKSDDSVRPGYLC 1639

Query: 646  SDNT 657
               T
Sbjct: 1640 CCGT 1643


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,070,401
Number of Sequences: 59808
Number of extensions: 537389
Number of successful extensions: 1360
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)