Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_A07
         (836 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)                  30   2.0  
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      30   2.0  
SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  

>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2653

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 128  GRVGPGCDGRDGVQRRRSASGLAAXTDVTRLDD 226
            G++ PG   RD  QR  +ASG     + TR DD
Sbjct: 2441 GKISPGTVSRDSAQRTSNASGSRNREEPTRNDD 2473


>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
          Length = 687

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = -3

Query: 186 EAERRRWTPSRPSHPGPTRPQPHVGAXALHAGXPWHSPAALP 61
           E  R  + P RP H  P RP   +G      G P H P  LP
Sbjct: 377 EPGRPPYEPGRPPHE-PGRPPHELGRPPHEPGRPPHEPGRLP 417


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = -3

Query: 186 EAERRRWTPSRPSHPGPTRPQPHVGAXALHAGXPWHSPAALP 61
           E  R  + P RP H  P RP   +G      G P H P  LP
Sbjct: 143 EPGRPPYEPGRPPHE-PGRPPHELGRPPHEPGRPPHEPGRLP 183


>SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 33  RGIPLRLXTRAAQRDCARXTLR-ATRPPQHVAGVALGPDATAETASSDVARPLD 191
           RG P +   RA  R  A+ + R    PP    G++  P +T  T+SS VA PLD
Sbjct: 35  RGRP-KASARARYRAEAQLSQRHGLSPPTPPEGISPLPTSTPSTSSSPVASPLD 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,942,486
Number of Sequences: 59808
Number of extensions: 375436
Number of successful extensions: 830
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)