Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B09
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       171   4e-43
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       171   4e-43
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                       123   1e-28

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  171 bits (416), Expect = 4e-43
 Identities = 81/160 (50%), Positives = 107/160 (66%), Gaps = 2/160 (1%)
 Frame = +1

Query: 157 RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 336
           R+L++G ++E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD
Sbjct: 61  RYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSD 120

Query: 337 FNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGV 510
           + +  +EFDSY++P+ ++   +FRLL+VD               TA DVIHS  +P+L V
Sbjct: 121 YQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAV 180

Query: 511 KVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIV 630
           K+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIV
Sbjct: 181 KMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIV 220


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  171 bits (416), Expect = 4e-43
 Identities = 81/160 (50%), Positives = 107/160 (66%), Gaps = 2/160 (1%)
 Frame = +1

Query: 157 RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 336
           R+L++G ++E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD
Sbjct: 61  RYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSD 120

Query: 337 FNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGV 510
           + +  +EFDSY++P+ ++   +FRLL+VD               TA DVIHS  +P+L V
Sbjct: 121 YQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAV 180

Query: 511 KVDANPGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIV 630
           K+DA PGRLNQT FFI RPG+F+GQCSEICGANHSF+PIV
Sbjct: 181 KMDAVPGRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIV 220


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score =  123 bits (297), Expect = 1e-28
 Identities = 62/142 (43%), Positives = 86/142 (60%), Gaps = 2/142 (1%)
 Frame = +1

Query: 157 RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSD 336
           R+L++G ++E+I TIIPA  LIFIA                 +T+K++GHQ Y  YEYSD
Sbjct: 61  RYLVDGTLLEVIWTIIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSD 120

Query: 337 FNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGV 510
           + +  +EFDSY++P+ ++   +FRLL+VD               TA DVIHS  +P+L V
Sbjct: 121 YQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAV 180

Query: 511 KVDANPGRLNQTNFFINRPGIF 576
           K+DA PGRLNQT FFI +   F
Sbjct: 181 KMDAVPGRLNQTGFFIKKTWSF 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,618,679
Number of Sequences: 59808
Number of extensions: 191397
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)