Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_A06
         (324 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16712| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.1  

>SB_16712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 529

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 44  NVWNNVCNYKHRSL 85
           +VW+ VC Y+HRS+
Sbjct: 411 DVWHPVCQYRHRSI 424


>SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 226 YFFFK**HLNCFYYYCCFF 170
           Y+++   +   +YYYCC+F
Sbjct: 18  YYYYYYYYYYYYYYYCCYF 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,277,568
Number of Sequences: 59808
Number of extensions: 103938
Number of successful extensions: 245
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)