Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0033
         (563 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22893| Best HMM Match : SWIM (HMM E-Value=0.99)                     29   3.5  
SB_19679| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)                27   8.0  

>SB_22893| Best HMM Match : SWIM (HMM E-Value=0.99)
          Length = 461

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 454 LPKKCSVGIKVITKFKKYASCCCSS 380
           LP K SV +  ++ F KY SC C +
Sbjct: 50  LPLKTSVSVSKLSGFVKYCSCSCKA 74


>SB_19679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 454 LPKKCSVGIKVITKFKKYASCCCSS 380
           LP K SV +  ++ F KY SC C +
Sbjct: 193 LPLKTSVSVSKLSGFVKYCSCSCKA 217


>SB_1528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2409

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 181  YILRI*LLFDKHKNNKSRPVFVEPLS 104
            Y++RI + F KHK  KS PV    LS
Sbjct: 1422 YVIRIQVFFSKHKGPKSDPVKSTTLS 1447


>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
          Length = 623

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 488 LLFVKTLTIKLTTQKMFCRNKSNYQVQKIRIVL 390
           ++F+K  +I   T+K   RN+ N + Q IR+V+
Sbjct: 59  MIFIKNASIPCITKKRNRRNQQNRRNQSIRLVV 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,591,905
Number of Sequences: 59808
Number of extensions: 228333
Number of successful extensions: 421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)