Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0030
(662 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 65 6e-11
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 38 0.006
SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4) 32 0.36
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 31 0.63
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1) 31 0.63
SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0) 31 0.84
SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 30 1.5
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 1.9
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 30 1.9
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_17850| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6) 29 2.6
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087) 29 2.6
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 29 3.4
SB_52306| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 29 4.5
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07) 29 4.5
SB_53576| Best HMM Match : SCAN (HMM E-Value=2.3) 29 4.5
SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1) 28 5.9
SB_44045| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 28 7.8
SB_15442| Best HMM Match : rve (HMM E-Value=0.00084) 28 7.8
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28) 28 7.8
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 64.9 bits (151), Expect = 6e-11
Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Frame = +3
Query: 237 PEVF--IRGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTT 410
PEV + + FD+S+LKH E QEKNPLP KD + E V+ FD +++KH
Sbjct: 674 PEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTESTETRA--EVKTFDHSKLKHVQ 731
Query: 411 TEEKNPL 431
TEEKNPL
Sbjct: 732 TEEKNPL 738
Score = 61.3 bits (142), Expect = 7e-10
Identities = 29/58 (50%), Positives = 38/58 (65%)
Frame = +3
Query: 258 IEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPL 431
++ F+ S+L+H ET+EKN LP KD +A EK GVE F K ++KH T EKNPL
Sbjct: 454 VKSFEKSKLQHVETKEKNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVETLEKNPL 510
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +3
Query: 258 IEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPL 431
+ KFD+S+LKH ET+EK +P KDV+ AE V+ FD +++KH T+EKNPL
Sbjct: 531 VAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVVTQEKNPL 586
Score = 56.8 bits (131), Expect = 1e-08
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +3
Query: 258 IEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKNPL 431
++ FD S+LKH ET EKNPLP V+ E + L D V FD +++KH +EKNPL
Sbjct: 643 VKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPL 702
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +3
Query: 258 IEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKN 425
++ FD S+LKH TQEKNPLP + E +N D V FD T++KH TT+EK+
Sbjct: 567 VKSFDHSKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKS 624
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +3
Query: 255 GIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEK 422
G+E F ++LKH ET EKNPLPD + AE + L D V FD +++KH T+EK
Sbjct: 490 GVEVFQKNKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEK 547
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +3
Query: 258 IEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKNPL 431
+ KFD++ LKH +T+EKN LP + + E D V+ F+K++++H T+EKN L
Sbjct: 414 VAKFDAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTL 473
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +3
Query: 258 IEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPL 431
+ FD ++LKH TQEK+ +P ++ + E V+ FD +++KH T EKNPL
Sbjct: 607 VASFDHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPL 662
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +3
Query: 258 IEKFDSSQLKHTETQEKNPLPDKDVVAAEKA 350
++ FD S+LKH +T+EKNPLPD +A EKA
Sbjct: 719 VKTFDHSKLKHVQTEEKNPLPDAKTIAQEKA 749
Score = 37.5 bits (83), Expect = 0.010
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +2
Query: 404 HDDGRKESTAP-DRSYRSGEGKEQIPERH--RELRSH*LKHTETCEKNPLPTKDVIEQEK 574
H ++++T P D + + ++ P+R + L+H ET EKN LPTKD I EK
Sbjct: 424 HVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK 483
Score = 34.7 bits (76), Expect = 0.068
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Frame = +2
Query: 404 HDDGRKESTAPD-RSYRSGEGKEQIPERHRELR--SH*LKHTETCEKNPLPTKDVIEQE 571
H + +++ PD ++ R+ E +P+R + + LKH ET EK +PTKDVIE E
Sbjct: 501 HVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +1
Query: 112 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 231
+P+V D +S++ F+TS L+ V+T EK+V+P+ + + E
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +2
Query: 509 LKHTETCEKNPLPTKDVIEQEKS 577
LKH E EKNPLPTKD I E +
Sbjct: 691 LKHVEVQEKNPLPTKDDITTEST 713
Score = 33.5 bits (73), Expect = 0.16
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 464 KEQIPERHRELRSH*---LKHTETCEKNPLPTKDVIEQE 571
KE+ + E++S LKH ET EKNPLP+ V+++E
Sbjct: 633 KEEAVDSRAEVKSFDHSKLKHVETVEKNPLPSAAVLKEE 671
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 509 LKHTETCEKNPLPTKDVIEQEKSA 580
LKH +T EKNPLP I QEK++
Sbjct: 727 LKHVQTEEKNPLPDAKTIAQEKAS 750
Score = 31.5 bits (68), Expect = 0.63
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 404 HDDGRKESTAPDRSYRSGEGKEQIPERHREL-RSH*LKHTETCEKNPLPTKDVIEQE 571
H + ++++T P + + E K P E+ + + LKH ET EKNPLP I E
Sbjct: 464 HVETKEKNTLPTKDTIADE-KRTAPFSGVEVFQKNKLKHVETLEKNPLPDAQNIRAE 519
Score = 31.5 bits (68), Expect = 0.63
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 112 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 231
+PK D +S++ F+ + L+ V T EK ++PS ED+ E
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +2
Query: 344 ESPPEPL-GRSRTLRQDSDEA-HDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*LKH 517
E PE L RS + D+ + H + +++ P + E + E S LKH
Sbjct: 519 EMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSRAEVKSFDHSK-LKH 577
Query: 518 TETCEKNPLPTKDVIEQE 571
T EKNPLPT + +E
Sbjct: 578 VVTQEKNPLPTPQTLHEE 595
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 509 LKHTETCEKNPLPTKDVIEQE 571
LKH +T EKN LP+ + I+QE
Sbjct: 422 LKHVQTKEKNTLPSDETIKQE 442
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 100 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKSLFEVSR 264
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S FE S+
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFENSK 388
>SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4)
Length = 426
Score = 32.3 bits (70), Expect = 0.36
Identities = 21/72 (29%), Positives = 28/72 (38%)
Frame = +2
Query: 278 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSG 457
P+ RDS E S + + SPP SR S + DD R R R
Sbjct: 51 PSSLGRDSSERRPSARVSSDNSRSPPHRRDSSRRSHSPSRRSSDD-RSTDARDRRDRRRS 109
Query: 458 EGKEQIPERHRE 493
+E+ P R R+
Sbjct: 110 SSRERRPPRDRD 121
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 31.5 bits (68), Expect = 0.63
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 30 ESSIPFVIKNILIQNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 164
E S+PF N QN ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
Length = 982
Score = 31.5 bits (68), Expect = 0.63
Identities = 12/71 (16%), Positives = 35/71 (49%)
Frame = +2
Query: 293 RDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQ 472
++ G+ + +++ R E P + L + ++ D+ + +E PD+ + +++
Sbjct: 829 QEQGKPDKNKEKQDREQEKPDKDLEKQYQKQEKPDKGQEKQDREQEKPDKDQEKQDREQE 888
Query: 473 IPERHRELRSH 505
P++ +E + H
Sbjct: 889 KPDKDQEKQDH 899
>SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0)
Length = 470
Score = 31.1 bits (67), Expect = 0.84
Identities = 20/93 (21%), Positives = 41/93 (44%)
Frame = +2
Query: 293 RDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQ 472
+D+ E+P + + G+ + ++ D + D E T P R +G+ +
Sbjct: 340 KDATEQPMNSTQ----GKVAKDDEDHAKVTAGKRDRSQSDSEPEDTTPLRQKGAGKDNSR 395
Query: 473 IPERHRELRSH*LKHTETCEKNPLPTKDVIEQE 571
RHR+ + +H+ ++ P+ DVI Q+
Sbjct: 396 -KRRHRKKTGNEAQHSAGSDEEDEPSYDVISQD 427
>SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/72 (29%), Positives = 28/72 (38%)
Frame = +2
Query: 278 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSG 457
P+ RDS E S + + SPP SR S + DD R R R
Sbjct: 51 PSSLGRDSSERRPSVRVSSDNSRSPPHRRDSSRRSHSPSRRSSDD-RSTDARDRRDRRRS 109
Query: 458 EGKEQIPERHRE 493
+E+ P R R+
Sbjct: 110 SSRERRPPRDRD 121
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 294 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 404
+T E++P DK A +LLDG+ FD+ + +H
Sbjct: 261 KTIEQDPTSDKSYKALRDTTHDLLDGLRDFDQAKEEH 297
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 294 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 404
+T E++P +K A +LLDG++HF + + +H
Sbjct: 163 KTIEQDPSSEKSYQALRDTTHDLLDGLQHFGQAKEEH 199
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 82 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 228
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Frame = +2
Query: 278 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSG 457
P+ R S S R R E RSR+ ++ ++S +P RS
Sbjct: 205 PSTDKRKSRSRSRSRSRSHRKSRKRSESRSRSRSPKKSRSARRSRSPQKSRSPQRSRSPR 264
Query: 458 EGKEQIPER-HRELRSH*LKHTETCEKNPLPTK 553
K R HR+ RSH + +++ P K
Sbjct: 265 SSKRYRSSRSHRKHRSHSRSRSPRSKRSRSPRK 297
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 422 ESTAPDRSYRSGEGKEQIPERHR 490
+STA D SY SG G E P HR
Sbjct: 483 DSTASDSSYDSGSGPELSPNEHR 505
>SB_17850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +2
Query: 275 EPAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKES 427
E E + E+PA+GQR+ R + + L R ++ + DS++ D+ + ES
Sbjct: 19 EEEEKDEEKEEKPATGQRK-RKTSTQKQALTRKKSKQSDSED-EDEKKSES 67
>SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6)
Length = 692
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 294 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 404
+T E++P +K A +LLDG+ +FD+ + +H
Sbjct: 537 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQAKEEH 573
>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 294 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 404
+T E++P +K A +LLDG+ +FD+ +H
Sbjct: 567 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 603
>SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)
Length = 556
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 294 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 404
+T E++P +K A +LLDG+ +FD+ +H
Sbjct: 492 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 528
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 103 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE-KTQKSLFEVS 261
L DL +V +LKS+ EG CL D++ + DV E + KS +S
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKEHENLKSAVSIS 1177
>SB_52306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = +2
Query: 278 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSG 457
P + HR S + +G+R G+ PE R ++ + E + T G
Sbjct: 75 PEKQHRGSVHKRGNGER----GQGSPEKQQRGSVHKRGNGEGKSSPENQHTGSIYKRGKG 130
Query: 458 EGKEQIPERHR 490
EGK +HR
Sbjct: 131 EGKSSPENQHR 141
>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1414
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/67 (29%), Positives = 27/67 (40%)
Frame = +2
Query: 293 RDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQ 472
RD G P+ R + +P G R R + D DD R E P S G + +
Sbjct: 623 RDDGGRPSREPPRDQHRRPYDDPEGLERESRGERDVRRDDPR-EDRRPGMSEGRGRDRPE 681
Query: 473 IPERHRE 493
P+R E
Sbjct: 682 RPDRTGE 688
>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/80 (31%), Positives = 34/80 (42%)
Frame = +2
Query: 335 RSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*LK 514
R +SP RSR R S E D R S +P S G + + R+R R
Sbjct: 318 RKSKSPSLERRRSRARRSRSIERRDRRRSRSRSPRSSL--GRSRRRSSSRNRRRR----- 370
Query: 515 HTETCEKNPLPTKDVIEQEK 574
+ K+PL TK E+E+
Sbjct: 371 --RSRSKSPLNTKSQCEKEQ 388
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Frame = +2
Query: 344 ESPPEPLGRSRTLRQDSDEAHDDGRKESTAP------DRSYRSGEGKEQIPERHRELRSH 505
ESP E R + D DE D R+E P RS R + + P R R SH
Sbjct: 173 ESPEEEKPRPHPVA-DEDERADVRRQEERTPLKRRSRSRSLRHEDHDDATPRRSR---SH 228
Query: 506 *LKHTETCEKNP 541
L+H + E++P
Sbjct: 229 SLRHEDEEERSP 240
>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
Length = 754
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 308 EPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRK-ESTAPDRS 445
EP R+C SPP GRS+T+ + D R ST+ D+S
Sbjct: 335 EPPQASRQC----SPPSRTGRSKTIHKRPRMTQPDSRNVSSTSRDKS 377
>SB_53576| Best HMM Match : SCAN (HMM E-Value=2.3)
Length = 334
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = +2
Query: 302 GEEPASGQRR----CRSGESPPEPLGRSRT-LRQDSDEAHDDGRK---ESTAPDRSYRSG 457
GEEP+S S + P P+ + + +D D+ +G + ES A DRS+ SG
Sbjct: 181 GEEPSSRTETPDLYILSNDIPTSPVDEAPLPVDEDDDDEQVNGLRMLPESVALDRSHESG 240
Query: 458 EGKEQIP 478
G +P
Sbjct: 241 RGTPHLP 247
>SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1)
Length = 766
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 303 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 404
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 75 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 108
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 303 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 404
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 173 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 206
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 303 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 404
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 222 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 255
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 303 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 404
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 320 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 353
>SB_44045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +2
Query: 299 SGEEPASGQRRCRSGE---SPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKE 469
S + +S +RR R E PP + ++ DGR +S AP R+ +G KE
Sbjct: 8 SSKSSSSRRRRPREQEIFIGPPTGMTSDSSVASSRGRRDGDGRSKSKAPPRAPETGLPKE 67
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 27.9 bits (59), Expect = 7.8
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Frame = +2
Query: 299 SGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGR--------KESTAPDRSYRS 454
+GE+ + + + +S P + R R+ RQ +DE DD K +T PD R
Sbjct: 1331 NGEDFENSKEKLKSSTLPNQR-NRIRSCRQSTDEFADDNTDEVMDMLVKSATVPDNRTRM 1389
Query: 455 GEGKEQIPERHRELRSH*LKHTETCEKNPLPTKDVIEQEK 574
+ + ++P +R+ LK T E TK V EK
Sbjct: 1390 RK-RTRMPNSNRKSARRTLKEGITPEDLEKLTKQVQILEK 1428
>SB_15442| Best HMM Match : rve (HMM E-Value=0.00084)
Length = 822
Score = 27.9 bits (59), Expect = 7.8
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Frame = +3
Query: 219 RCH*EDPEVFIRGIEKFDSS---QLKHTETQEKNPLPDKD----VVAAEKAHQNLLDGVE 377
+ H DP FIRG ++ + L+ + P KD +A EKA + ++DG
Sbjct: 690 KTHKSDPVAFIRGYHEYMTEWEPALEDVYKLMRQPTNIKDPNAVAIAREKADKTVMDGDV 749
Query: 378 HFDKTQMKHTTTEEK 422
+ +Q + T EK
Sbjct: 750 GYQISQEQRPTNCEK 764
>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
Length = 859
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 296 DSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAP-DRSYRSGEGKEQ 472
D+G +S R S ES E + + T +D D D R+ +++P D S R G+G +
Sbjct: 8 DNGVALSSMSSRQTSTESLEENIRKILTSCEDDDNEFLDRRRSTSSPEDVSNRKGKGSPK 67
Query: 473 IPERHRE 493
E ++
Sbjct: 68 EVENGKK 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,118,778
Number of Sequences: 59808
Number of extensions: 389824
Number of successful extensions: 1510
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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