Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0024
         (476 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   1e-16
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)                      54   5e-08
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 29   1.5  
SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_51004| Best HMM Match : Fork_head (HMM E-Value=3)                   27   7.9  
SB_12905| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_39815| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 57/155 (36%), Positives = 73/155 (47%), Gaps = 3/155 (1%)
 Frame = +3

Query: 21  GKLALLSVSDKTGLLSLAKSLSECGLQLIASXGTAT---XASERWPHSSRCVGHHESTGD 191
           G LALLSVS+K GL+  AK L + G +L+AS GTA     A       S   G  E  G 
Sbjct: 33  GSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEITGAPEMLGG 92

Query: 192 ARRSGENFTSSGTCWDLSSIXDSDQEDMKRQKYEMISVVVXXLYPFXXXXXXXXXXXXXX 371
             ++       G    L+ + + D+ DM +Q +E I VVV  LYPF              
Sbjct: 93  RVKTLHPAVHGGI---LARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEA 149

Query: 372 XXNIDIGXVTLLRAQPRTTXGSPFVCXPADYDAVV 476
              IDIG VTLLRA  +       VC P DY+ V+
Sbjct: 150 VEQIDIGGVTLLRAAAKNHERVTVVCDPEDYNKVL 184



 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = +1

Query: 133 LRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGI 240
           +RNAG+ V+DVS+IT APEMLGGRVKTLHPAVH GI
Sbjct: 70  IRNAGIPVRDVSEITGAPEMLGGRVKTLHPAVHGGI 105


>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
          Length = 79

 Score = 54.4 bits (125), Expect = 5e-08
 Identities = 29/76 (38%), Positives = 37/76 (48%)
 Frame = +3

Query: 240 LSSIXDSDQEDMKRQKYEMISVVVXXLYPFXXXXXXXXXXXXXXXXNIDIGXVTLLRAQP 419
           L+ + + D+ DM +Q +E I VVV  LYPF                 IDIG VTLLRA  
Sbjct: 3   LARVSEGDKADMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRAAA 62

Query: 420 RTTXGSPFVCXPADYD 467
           +       VC P DY+
Sbjct: 63  KNHERVTVVCDPEDYN 78


>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 645

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 17  QWKTSSSQRFRQDGSTLVSKEP 82
           QW T  ++R+R+DGS ++  EP
Sbjct: 334 QWHTVVAERYRRDGSLILDSEP 355


>SB_15059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 947

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 108 ASXGTATXASERWPHSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIXDSDQED 272
           ++ G    A +    S RCV   ES G     G + + SG+C D + + D D  D
Sbjct: 30  SATGKCERAIQGHAGSIRCVHVAESRGVVLSGGYDTSISGSCDDDNKVGDDDGVD 84


>SB_51004| Best HMM Match : Fork_head (HMM E-Value=3)
          Length = 136

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 135 SERWPHSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIXDSDQEDMKRQK 287
           S+  PH+S      ES G+   + E   SSG   D  S+ D   E  K+ +
Sbjct: 51  SDFGPHNSVLETRKESIGEKSTASERGRSSGGVKDTESVEDDRGEGGKKAR 101


>SB_12905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 135 SERWPHSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIXDSDQEDMKRQK 287
           S+  PH+S      ES G+   + E   SSG   D  S+ D   E  K+ +
Sbjct: 51  SDFGPHNSVLETRKESIGEKSTASERGRSSGGVKDTESVEDDRGEGGKKAR 101


>SB_39815| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 693

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +3

Query: 39  SVSDKTGLLSLAKSLSECGLQLIASXGTATXASERWPHSSRCVGHHEST 185
           ++S +TG+L  A     C    I S   +    E+W     C G +E +
Sbjct: 294 AISTETGVLDYAVVSKNCNACNIQSKKLSVEEFEQWAEDHECPGGYEGS 342


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,600,965
Number of Sequences: 59808
Number of extensions: 212809
Number of successful extensions: 465
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)