Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0016
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14)               33   0.25 
SB_48462| Best HMM Match : zf-C2H2 (HMM E-Value=1.1e-18)               30   1.8  
SB_35180| Best HMM Match : DUF795 (HMM E-Value=2.1)                    28   7.2  
SB_32654| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14)
          Length = 334

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 14/57 (24%), Positives = 33/57 (57%)
 Frame = -1

Query: 517 HQTREQSKNIPRWKRYVQKEC*LAFNLIFFSSLSYPISRQHQMVVVNPHDRWTSIFV 347
           H+   QS+++P+W+RY        +NLI++ +L++P   Q  +++    + ++ + V
Sbjct: 9   HRQALQSEDLPKWERY------YGYNLIYYYNLTHPTYSQLLLLITRSSENFSRLHV 59


>SB_48462| Best HMM Match : zf-C2H2 (HMM E-Value=1.1e-18)
          Length = 536

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -2

Query: 594 AVNEIQTVILYVESHHITTQNSLQNFIRPGNSLKISHGGNGMC 466
           A  ++QT + ++ S+ IT + +    I+PGN L++S  G   C
Sbjct: 438 ARKQVQTRMSFMSSNEITPRITAGVGIQPGNKLEVSQTGREKC 480


>SB_35180| Best HMM Match : DUF795 (HMM E-Value=2.1)
          Length = 388

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 523 KLHQTREQSKNIPRWKRYVQKE 458
           K  +T+    N P+WK Y+Q+E
Sbjct: 200 KYEKTQALDSNFPKWKEYIQQE 221


>SB_32654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 369 IGGLPFLSFFCLFSRWRAWTVFSANSSFILIYAFQWSARKWHGLASNETTARMSRYSI 196
           +GG+     + + SR+  W +    ++  L Y  Q  ARK H   SN+ T  ++ YS+
Sbjct: 18  VGGIVITGIY-IVSRYARWRLDEWRANQELEYIAQ--ARKQHHFESNQRTCSVTLYSL 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,539,810
Number of Sequences: 59808
Number of extensions: 597127
Number of successful extensions: 1489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)