Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0007
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       30   2.2  
SB_20695| Best HMM Match : YscO (HMM E-Value=4)                        29   5.0  
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)                   28   8.7  

>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 279  KDVEAAPEIPEHYS-SKLNVPENPEI 353
            KD + APEIP H    +LNVPE  EI
Sbjct: 3580 KDKQYAPEIPGHEDRQELNVPEGQEI 3605


>SB_20695| Best HMM Match : YscO (HMM E-Value=4)
          Length = 192

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 267 FRRAGVESFSQIRIDFFEGRVSAPDVNGHVTR 172
           F R  +ES SQ  I+F +  +S PD + H TR
Sbjct: 143 FNRMVLESLSQESIEFNKTPISQPDASMHKTR 174


>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
          Length = 686

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 273 AGKDVEAAPEIPEHYSSKLNVPENPEIGDS 362
           A +   AA   PEH ++  N P++  +GDS
Sbjct: 442 APESYPAAQHTPEHLTNTRNTPDHTHVGDS 471


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,724,962
Number of Sequences: 59808
Number of extensions: 347167
Number of successful extensions: 780
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)