SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0004
         (841 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)                    72   5e-13
SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)                  33   0.38 
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)                   30   2.7  
SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_53645| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)         29   4.7  
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)                      29   6.2  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   28   8.2  
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)                   28   8.2  
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  

>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
          Length = 750

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 40/90 (44%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
 Frame = +1

Query: 10  VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAE--KE 183
           V+T EK  LP+ + +A EK + + F G+E F  ++LKH ET EKNPLPD   I AE   E
Sbjct: 465 VETKEKNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVETLEKNPLPDAQNIRAEMMPE 523

Query: 184 KNKFLNGIENFDPTKLKHTETCEKTRSPQR 273
                + +  FD +KLKH ET EK   P +
Sbjct: 524 VLPDRSEVAKFDTSKLKHVETKEKVVMPTK 553



 Score = 69.7 bits (163), Expect = 3e-12
 Identities = 40/95 (42%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
 Frame = +1

Query: 4   RDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDSSQLKHTETQEKNPLPDKDAIXAE 177
           + V T EK  LPS E +  E       D  E   F+ S+L+H ET+EKN LP KD I  E
Sbjct: 423 KHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADE 482

Query: 178 KEKNKFLNGIENFDPTKLKHTETCEKTRSPQRTSL 282
           K    F +G+E F   KLKH ET EK   P   ++
Sbjct: 483 KRTAPF-SGVEVFQKNKLKHVETLEKNPLPDAQNI 516



 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
 Frame = +1

Query: 4   RDVDTNEKIVLPSAEDVATEKTQKSLFD--GIEKFDSSQLKHTETQEKNPLPDKDAIXAE 177
           + V+T EK  LPSA  +  E   + L D   +  FD+S+LKH E QEKNPLP KD I  E
Sbjct: 652 KHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTE 711

Query: 178 KEKNKFLNGIENFDPTKLKHTETCEKTRSPQRTSLSK 288
             + +    ++ FD +KLKH +T EK   P   ++++
Sbjct: 712 STETR--AEVKTFDHSKLKHVQTEEKNPLPDAKTIAQ 746



 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
 Frame = +1

Query: 4   RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAEKE 183
           + V T EK ++PS ED+  E         ++ FD S+LKH ET EKNPLP    +  E  
Sbjct: 616 KHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPLPSAAVLKEEMR 673

Query: 184 KNKF--LNGIENFDPTKLKHTETCEKTRSPQRTSLS 285
                 ++ + +FD +KLKH E  EK   P +  ++
Sbjct: 674 PEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDIT 709



 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
 Frame = +1

Query: 4   RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAEK- 180
           + V+T EK+V+P+ + +  E         ++ FD S+LKH  TQEKNPLP    +  E  
Sbjct: 540 KHVETKEKVVMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVVTQEKNPLPTPQTLHEELI 597

Query: 181 EKNK-FLNGIENFDPTKLKHTETCEKTRSPQRTSLSK 288
            KNK   + + +FD TKLKH  T EK+  P +  + +
Sbjct: 598 PKNKPDRSEVASFDHTKLKHVTTQEKSIMPSQEDIKE 634



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
 Frame = +1

Query: 4   RDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDSSQLKHTETQEKNPLPDKDAIXAE 177
           + V+T EK  LP A+++  E   + L D  E  KFD+S+LKH ET+EK  +P KD I AE
Sbjct: 500 KHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559

Query: 178 KEKNKFLNGIENFDPTKLKHTETCEKTRSPQRTSL 282
              ++    +++FD +KLKH  T EK   P   +L
Sbjct: 560 AIDSR--AEVKSFDHSKLKHVVTQEKNPLPTPQTL 592



 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
 Frame = +1

Query: 13  DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAEKEKNK 192
           DT ++I  P +E    +   K     + KFD++ LKH +T+EKN LP  + I  E + ++
Sbjct: 389 DTPQQI-WPGSEVAYVDGGSKPDVSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDE 447

Query: 193 FLN--GIENFDPTKLKHTETCEKTRSPQRTSLSKRNQLEP 306
           F +   +++F+ +KL+H ET EK   P + +++   +  P
Sbjct: 448 FPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEKRTAP 487



 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
 Frame = +1

Query: 4   RDVDTNEKIVLPSAEDVATEKTQKSLFDGIE--KFDSSQLKHTETQEKNPLPDKDAIXAE 177
           + V T EK  LP+ + +  E   K+  D  E   FD ++LKH  TQEK+ +P ++ I  E
Sbjct: 576 KHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635

Query: 178 KEKNKFLNGIENFDPTKLKHTETCEKTRSPQRTSLSKRNQLEPL 309
              ++    +++FD +KLKH ET EK   P    L +  + E L
Sbjct: 636 AVDSR--AEVKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVL 677



 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 26/59 (44%), Positives = 37/59 (62%)
 Frame = +1

Query: 4   RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAEK 180
           + V+  EK  LP+ +D+ TE T+      ++ FD S+LKH +T+EKNPLPD   I  EK
Sbjct: 692 KHVEVQEKNPLPTKDDITTESTETRA--EVKTFDHSKLKHVQTEEKNPLPDAKTIAQEK 748


>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
          Length = 900

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +1

Query: 7   DVDTNEKIVLPSAEDVATEKTQKSLFDG-IEKFDSSQLKHTETQEKNPLPDKDAIXAEKE 183
           DV      + P+    A EKT K + DG +EK+     +  +T   + L D D    E+E
Sbjct: 341 DVIGKPPAIPPAQVQAAEEKTPKDIIDGLLEKYKEIGSQMADTSADDGLDDDD---VEEE 397

Query: 184 KNKFLNGIENFDPTKLK 234
            +  L+  + F  TK K
Sbjct: 398 DDDVLDEADRFRDTKRK 414


>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
          Length = 385

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 34  LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLP 153
           L S  D   EKT     D +E+F S   +H  T +KNPLP
Sbjct: 194 LSSRSDHVQEKT-----DRLEQFSSQTGRHINTTKKNPLP 228


>SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 118 KHTETQEKNPLPDKDAIXAEKEKNKFLNGIENFDPTKLKHTETCEKT 258
           +HTE  + +P P K  I  E  +++  + I+       KH+ +CE+T
Sbjct: 212 RHTENAKSSPDPIKSEIDGEHSEDEKEHKIKVCPLVDKKHSHSCERT 258


>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 363 LM*VRSICVVHYKFYFCFCTMATLPG 440
           L+ V  IC VH  FY+C C  +++ G
Sbjct: 55  LVAVLRICSVHLDFYYCTCVWSSMAG 80


>SB_53645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +1

Query: 1   GRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKF-DSSQLKHTET-QEKNP 147
           G  VD +E +++ S+ D + EK   S    +EK+  S Q K T++ QEK P
Sbjct: 50  GEPVDDHEVVIVVSSHDSSEEKRHLSTRYNLEKWPGSDQEKWTDSFQEKIP 100


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 84  RRYREV*FEPAEAHRDSGEEPASGQRRYXSGEGKEQIPERHRELRS 221
           RR +E+    AE H+    EPA  + R+ SGE  E+    H E++S
Sbjct: 35  RREQEIIELKAELHKRDDLEPAGQRHRHDSGESFEE----HEEIKS 76


>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
          Length = 1293

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 84  RRYREV*FEPAEAHRDSGEEPASGQRRYXSGEGKEQIPERHRELRS 221
           RR +E+    AE H+    EPA  + R+ SGE  E+    H E++S
Sbjct: 11  RREQEIIELKAELHKRDDLEPAGQRHRHDSGESFEE----HEEIKS 52


>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
          Length = 644

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 320 VTRKCISLVSPYFNIDVSQIDL 385
           +  KC  L+SPY ++D+   DL
Sbjct: 13  IAAKCTQLISPYLDLDIKYFDL 34


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 43   AEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIXAEK 180
            ++D   EKT+ S+ +  +  DSS      T+EK    +KD    E+
Sbjct: 1546 SDDGTDEKTEDSMQEDAKDLDSSNTASDTTKEKGKNKEKDKTVLER 1591


>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
          Length = 590

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +3

Query: 105 FEPAEAHRDSGEEPASGQRRYXSGEG 182
           FEP E H DSG+E       Y   EG
Sbjct: 266 FEPMEIHDDSGDEDVDSDDDYDDREG 291


>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/70 (21%), Positives = 35/70 (50%)
 Frame = +1

Query: 127 ETQEKNPLPDKDAIXAEKEKNKFLNGIENFDPTKLKHTETCEKTRSPQRTSLSKRNQLEP 306
           E ++ +PL  +D    + ++++  +   N   ++ KH+ +   +R  Q+ S S+R+   P
Sbjct: 218 ERKQSHPLSSRDQTTRQSKRSRSRSATLNQKRSRSKHSRSRSNSRD-QKRSRSRRSHTPP 276

Query: 307 LLYNSYSQMY 336
                 S++Y
Sbjct: 277 SEERPKSRLY 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,128,852
Number of Sequences: 59808
Number of extensions: 398882
Number of successful extensions: 1236
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -