Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0003
(768 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_40635| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2) 30 1.8
SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_57281| Best HMM Match : Keratin_B2 (HMM E-Value=1.1) 29 5.5
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_10387| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13) 28 9.5
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = -3
Query: 127 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
SWI RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -3
Query: 112 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -3
Query: 112 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -3
Query: 112 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = -3
Query: 112 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 58.4 bits (135), Expect = 6e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -3
Query: 109 RTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
RT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 8e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -3
Query: 109 RTSAKAFAKGVFINQERKLEVRRRLDT 29
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 48.0 bits (109), Expect = 8e-06
Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Frame = -3
Query: 112 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
R+T+ ++ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 134 VKFLDRRKTNISESICQRCFHQSRTKV 54
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = -3
Query: 112 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
R+T+ ++ + VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -2
Query: 134 VKFLDRRKTNISESICQRCFHQSRTKV 54
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -3
Query: 112 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 131 KFLDRRKTNISESICQRCFHQSRTKV 54
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -3
Query: 112 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -2
Query: 134 VKFLDRRKTNISESICQRCFHQSRTKV 54
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = -3
Query: 112 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 8
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = -2
Query: 134 VKFLDRRKTNISESICQRCFHQSRTKV 54
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 32.7 bits (71), Expect = 0.34
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +3
Query: 681 KPFLRLPLRNRTLI 722
KPFLRLPLRNRTLI
Sbjct: 223 KPFLRLPLRNRTLI 236
>SB_492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 67
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -3
Query: 508 IPAPIAYTKIVAVKKL 461
IPAPIAY K+VAVKKL
Sbjct: 38 IPAPIAYIKVVAVKKL 53
>SB_51316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -3
Query: 508 IPAPIAYTKIVAVKKL 461
IPAPIAY K+VAVKKL
Sbjct: 83 IPAPIAYIKVVAVKKL 98
>SB_50608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -3
Query: 508 IPAPIAYTKIVAVKKL 461
IPAPIAY K+VAVKKL
Sbjct: 11 IPAPIAYIKVVAVKKL 26
>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -3
Query: 508 IPAPIAYTKIVAVKKL 461
IPAPIAY K+VAVKKL
Sbjct: 75 IPAPIAYIKVVAVKKL 90
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 600 TLTRPRNRNEYTLNILTRNNWRASLVPAAAV 508
T + R ++++ R +WRASLVPAAAV
Sbjct: 44 TCQQTTTRVHAAMHLVIRIHWRASLVPAAAV 74
>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -3
Query: 508 IPAPIAYTKIVAVKKL 461
IPAPIAY K+VAVKKL
Sbjct: 28 IPAPIAYIKVVAVKKL 43
>SB_15948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 32.3 bits (70), Expect = 0.44
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -3
Query: 508 IPAPIAYTKIVAVKKL 461
IPAPIAY K+VAVKKL
Sbjct: 15 IPAPIAYIKVVAVKKL 30
>SB_40635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -3
Query: 541 LEGKSGASSRGIPAPIAYTKIVAVKKL 461
+EGKSGASSRG + + K+ + KKL
Sbjct: 1 MEGKSGASSRGYSSSNSVYKVCSFKKL 27
>SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)
Length = 918
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 467 FNRNNFSIRYWS-WNTAAAGTRLALQLFLVKIFKVYSFRLRGL 592
+ F+I W +T G+R L+ F++ +KVY RL GL
Sbjct: 714 YTLGRFTIHDWKVHDTHLEGSRYTLERFMIHPWKVYDTRLEGL 756
>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +2
Query: 671 WMW*AVSQASSPESNPDSRYP 733
W AVSQA SPESNP+S P
Sbjct: 104 WDVVAVSQAPSPESNPNSPSP 124
>SB_32453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +3
Query: 534 PSN--CSSLKYLKCTHSDYEAS*ESRIVIFRHYL-PVPGVGNLRA 659
PSN CS L YL+C +R+++F H L +G RA
Sbjct: 523 PSNLRCSILSYLRCNKPPVTIRWRTRLIVFTHLLVSYRSIGGQRA 567
>SB_57281| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
Length = 319
Score = 28.7 bits (61), Expect = 5.5
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 514 GCWHQTCPPIVPR*NI*SVLIPITRPR-KSPVSLF-FVTTSPCREWVICALLASLDVVSR 687
GC HQ P+V L P+ R SPV L V TS C EW+ +L+ + V S
Sbjct: 138 GC-HQWLSPVVVTSGCHQWLSPVVVTRWLSPVVLSRVVVTSGCHEWLSPVVLSRVVVTSG 196
Query: 688 FSGFLSGI 711
+LS +
Sbjct: 197 CHEWLSRV 204
>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +2
Query: 683 AVSQASSPESNPDSRYP 733
AVSQA SPESNP+S P
Sbjct: 52 AVSQAPSPESNPNSPSP 68
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 195 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 85
Q EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +1
Query: 196 KTNKIEPRSYSIIPCTKYSRAFLARFEHSNLFKVKLSAHL 315
K + ++ Y+ + +S+ RFEH+N ++KL+ ++
Sbjct: 725 KNHSVDKHDYNNVTPLLFSQERFERFEHNNSLEIKLTVNI 764
>SB_10387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 597
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/39 (25%), Positives = 24/39 (61%)
Frame = -2
Query: 722 NQGSIPERKPEKRLTTSKEASSAQITHSRHGEVVTKNND 606
++G+I ++P+ L + ++ S++++ S H + NND
Sbjct: 86 SEGAILIKRPQTALESGRKRSASEMIPSHHSKSFNNNND 124
>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
Length = 916
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -2
Query: 671 KEASSAQITHSRHGEVVTKNNDTGLLRGLVIG 576
+ S++ ++H HG T+N +G+ L G
Sbjct: 673 RSRSTSNLSHGNHGSTTTRNMSSGIQSNLAFG 704
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,733,290
Number of Sequences: 59808
Number of extensions: 504560
Number of successful extensions: 1359
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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