Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0126
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)               31   0.81 
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)          29   3.3  
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_33948| Best HMM Match : rve (HMM E-Value=2.8e-29)                   29   5.7  
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)                   28   7.6  
SB_16640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0)                 28   7.6  

>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
          Length = 446

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 529 LFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLXXFGDRGIP 669
           +F  F   + ++       PD  WD++T+RP + H     +G RG P
Sbjct: 12  VFTIFFFKESQSAVPRTSIPDEKWDYVTVRP-SAHMFWWLYGARGEP 57


>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 619 PETIHQLLXXFGDRGIPDGYRHMNGYGSHTFKLVNSQ--GVGYWVKFHYKLTRGLKTY 786
           P+ +H ++  +GDR +PD         SH F    ++   VGY+  F  ++  G K Y
Sbjct: 256 PDPLHYIVLSYGDRWMPDLEHAPLCRYSHGFTFTRNEVINVGYYFPFDEQVDLGQKWY 313


>SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)
          Length = 278

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 602 SQNMSGSFRCVAGFLF*VWIKLGNNVGSLIKKWEYYFQLNPTLHHQYR 459
           S+++S +  C+ G+      K+G +  +LI   +  F  +P  HH YR
Sbjct: 18  SEDVSFTCTCLLGYTGSTCKKIGKDSANLISPKKTCFPYHPHYHHHYR 65


>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1331

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 312 TSKYPKAPAPLACTTRSGIPPCQR 241
           T K PK   P+A   RSG+PP  R
Sbjct: 428 TGKKPKVKEPVAIRQRSGMPPMNR 451


>SB_33948| Best HMM Match : rve (HMM E-Value=2.8e-29)
          Length = 361

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 574 HLKDPDMFWDFLTLRPETIHQLLXXFGDRGIPDGYRHMNG 693
           H K P++F    T  P+TI  L   F   G+P+     NG
Sbjct: 201 HSKWPEIFATSSTTAPKTIEMLAGLFASHGLPEEMVSDNG 240


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 480  HTPSSV*NFTAKPRGSRTVSADPLSPPTVENLTAIGVLLP 361
            +TPS     TA PR SR  +    S PT + LTA   +LP
Sbjct: 2119 YTPSCPDTLTATPRVSRHANRYAPSVPTHDTLTATPRVLP 2158


>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
          Length = 1088

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 374 PIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDL 487
           P+AV+  T+  + G    ++   G  V  Y D+G W+L
Sbjct: 127 PLAVKLGTITPDGGGNSYLQCDTGLWVVAYGDEGQWNL 164


>SB_16640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/78 (23%), Positives = 32/78 (41%)
 Frame = +3

Query: 543 YPYSEEKPCNTSERSRHVLGLFDLKTRDHPSTSLXVWRPWYS*WLQTYEWIWFPYIQACE 722
           Y   +   C  +E   +V  +       H  T    WR W + +  T +WI      + +
Sbjct: 89  YACMQPSACKIAESLTYVNAMAKSGRLHHVETVNVDWRAWIAKYTNTSQWI------SVD 142

Query: 723 FSRCWVLGKIPL*ANQGI 776
           F  C ++ K+   A+QG+
Sbjct: 143 FQECMIVRKV---ASQGL 157


>SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0)
          Length = 465

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 8/31 (25%), Positives = 23/31 (74%)
 Frame = -1

Query: 643 KEVDGWSLVLRSKSPKTCLDLSDVLQGFSSE 551
           ++V G   +++ ++ K C+++SD+++G ++E
Sbjct: 13  RKVGGLGFLVKERASKPCVEISDIVKGSAAE 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,653,308
Number of Sequences: 59808
Number of extensions: 610782
Number of successful extensions: 1405
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)