Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0014
(389 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17) 35 0.021
SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026) 35 0.021
SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.047
SB_45202| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.33
SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12) 30 0.77
SB_57452| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.77
SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.77
SB_936| Best HMM Match : DUF1127 (HMM E-Value=3.2) 30 0.77
SB_48988| Best HMM Match : DUF1127 (HMM E-Value=1.5) 29 1.0
SB_1075| Best HMM Match : rve (HMM E-Value=0.0089) 29 1.0
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_39791| Best HMM Match : RVT_1 (HMM E-Value=0.083) 28 3.1
SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_36059| Best HMM Match : TolA (HMM E-Value=0.1) 27 4.1
SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8) 27 4.1
SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0) 27 5.4
SB_22154| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_59010| Best HMM Match : rve (HMM E-Value=0.0052) 27 7.2
SB_27943| Best HMM Match : Pox_A32 (HMM E-Value=0.047) 27 7.2
SB_9870| Best HMM Match : GspM (HMM E-Value=1.9) 27 7.2
SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_49753| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-30) 26 9.5
SB_2704| Best HMM Match : TP2 (HMM E-Value=6.9) 26 9.5
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 26 9.5
SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_53151| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_35426| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_22331| Best HMM Match : fn3 (HMM E-Value=7.1e-14) 26 9.5
SB_8182| Best HMM Match : ATP-synt_E (HMM E-Value=1.8) 26 9.5
SB_6427| Best HMM Match : RBM1CTR (HMM E-Value=0.42) 26 9.5
>SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)
Length = 262
Score = 35.1 bits (77), Expect = 0.021
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +2
Query: 8 KGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDNKRSKIEQMFELQHLK 187
K ++ ++E LTK R D S + + WT DG I V L +K E + L+ LK
Sbjct: 193 KKDKLRVNEDLTKGRLDAIKAINSKLDIYKLWTIDGTIHVRLNKDKDKAKEIIHSLRQLK 252
>SB_53000| Best HMM Match : Transposase_22 (HMM E-Value=0.026)
Length = 301
Score = 35.1 bits (77), Expect = 0.021
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +2
Query: 8 KGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDNKRSKIEQMFELQHLK 187
K ++ ++E LTK R D S + + WT DG I V L +K E + L+ LK
Sbjct: 232 KKEKLRVNEDLTKGRLDAIKAINSKLDIYKLWTIDGTIHVRLNKDKDKAKEIIHSLRQLK 291
>SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 33.9 bits (74), Expect = 0.047
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +2
Query: 5 LKGSRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLLPDNKRSKIEQMFEL 175
L + + ISE LT + +F L + F K WT GK VL+ ++ S Q+ L
Sbjct: 297 LADNSIYISESLTANNKAIFKGALSFKKEFRFKFIWTVHGK--VLIRKDEHSPAIQIKSL 354
Query: 176 QHLKTKFPSAQKAQGAPQSS 235
QHL + Q APQ S
Sbjct: 355 QHL----ADLRSEQAAPQQS 370
>SB_45202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 31.1 bits (67), Expect = 0.33
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = +2
Query: 14 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 181
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 123 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 182
Query: 182 LKTKFP-SAQKAQGAPQSSGKSHD 250
LK + +Q+ + A + K+ D
Sbjct: 183 LKQREDHHSQEVESANLTGTKAFD 206
>SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12)
Length = 792
Score = 29.9 bits (64), Expect = 0.77
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +2
Query: 14 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 181
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 123 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 182
Query: 182 LKTK 193
LK +
Sbjct: 183 LKQR 186
>SB_57452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 29.9 bits (64), Expect = 0.77
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +2
Query: 14 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 181
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 27 NKIYISESLSPGNRELFKAELSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 86
Query: 182 LKTK 193
LK +
Sbjct: 87 LKQR 90
>SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 29.9 bits (64), Expect = 0.77
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 161 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRR 262
+M E Q + P Q AQG Q GK H EP R
Sbjct: 749 EMEEHQGSTSAQPDEQLAQGLAQEPGKQHQEPAR 782
>SB_936| Best HMM Match : DUF1127 (HMM E-Value=3.2)
Length = 280
Score = 29.9 bits (64), Expect = 0.77
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +2
Query: 14 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 181
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + +L H
Sbjct: 201 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDSQAVLISKSQDLLH 260
Query: 182 LKTK 193
LK +
Sbjct: 261 LKQR 264
>SB_48988| Best HMM Match : DUF1127 (HMM E-Value=1.5)
Length = 270
Score = 29.5 bits (63), Expect = 1.0
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 14 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 181
+++ ISE L+ ++F L AR K WT +GK+ + D + I + +L H
Sbjct: 191 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNNDGQAVLISKSQDLLH 250
Query: 182 LKTK 193
LK +
Sbjct: 251 LKQR 254
>SB_1075| Best HMM Match : rve (HMM E-Value=0.0089)
Length = 1617
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 161 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRRH 265
+M E Q + P Q AQ Q GK H EP RH
Sbjct: 1113 EMEEPQGSTSAQPDEQLAQELAQEPGKRHQEPARH 1147
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 197 PSAQKAQGAPQSSGKSHDEPRRHQNQRQSEKSARGRLVESSM 322
P+ +A+ SGKSH++ +++ SE S++G+LV S +
Sbjct: 1255 PACVRAECCGNKSGKSHED-----SKKASETSSKGKLVSSKL 1291
>SB_39791| Best HMM Match : RVT_1 (HMM E-Value=0.083)
Length = 497
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +2
Query: 14 SRVIISEFLTKSRHDVF---LEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQH 181
+++ ISE L+ ++F L AR K WT +GK+ + D++ I + + H
Sbjct: 150 NKIYISESLSPGNRELFKAALSARHDLKFKYIWTQNGKVFLRKNKDSQAVLISKSQDSLH 209
Query: 182 LKTK 193
LK +
Sbjct: 210 LKQR 213
>SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +2
Query: 161 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRR 262
QM E Q + P Q AQ Q GK H EP R
Sbjct: 739 QMGEPQGSTSAQPDEQLAQELAQEPGKQHQEPAR 772
>SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)
Length = 1936
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +2
Query: 158 EQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRRHQNQRQSEKSARGRL 307
+++ E ++ K K P Q G+ + G H+E + + ++ S+K + GR+
Sbjct: 1236 KRLEEEKNAKRKRPGQQGGPGSKEKKG--HEEKKEKKPEKSSDKLSSGRV 1283
>SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8)
Length = 841
Score = 27.5 bits (58), Expect = 4.1
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Frame = +2
Query: 8 KGSRVIISEFLTKSRHDVFLEARSHFGVKRCWTTDGKIIVLLPDNKRSKI----EQMFEL 175
K + ++E LTK R D + + WT D I V L +K +I Q+ +L
Sbjct: 735 KKEKFRVNEDLTKGRLDAIKAINVKLDIYKLWTIDVTIQVRLNKDKAKEIIHSLRQLKDL 794
Query: 176 QHLKTKFPSAQKAQGAPQSSGKSHDEPRRHQNQRQ 280
Q L K + Q++ + P +QN +
Sbjct: 795 QQLIEKVLDTENQN--EQNTEHLNSMPFSNQNNNE 827
>SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)
Length = 883
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 155 IEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRRHQNQRQSEKSARGR 304
I ++ E+QHL+ S Q + A + K+HD R N+ E AR R
Sbjct: 548 IRKLAEIQHLENVKQSEQALKEAAERVTKAHDR-ERDINRMVQELKARFR 596
>SB_22154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 27.1 bits (57), Expect = 5.4
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -1
Query: 254 VRHEISQMTEELLALFEPRETWFSDAEVQTSVQSYCVYYPGEGRLFSHLL 105
V + Q T ++++ R + Q V + YP EGR F HL+
Sbjct: 4 VNDQQKQATVHIISMRRIRSWIYESRHRQIKVSLFSKGYPEEGRNFDHLI 53
>SB_59010| Best HMM Match : rve (HMM E-Value=0.0052)
Length = 935
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 161 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRR 262
+M E Q + P Q AQ Q GK H EP R
Sbjct: 554 EMGEPQGSTSAQPDEQLAQELAQEPGKQHQEPAR 587
>SB_27943| Best HMM Match : Pox_A32 (HMM E-Value=0.047)
Length = 983
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 161 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRR 262
+M E Q + P Q AQ Q GK H EP R
Sbjct: 682 RMEEPQGSTSARPDEQPAQELAQEPGKQHQEPAR 715
>SB_9870| Best HMM Match : GspM (HMM E-Value=1.9)
Length = 522
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 161 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRR 262
+M E Q + P Q AQ Q GK H EP R
Sbjct: 138 RMEEPQGSTSARPDEQPAQELAQEPGKQHQEPAR 171
>SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1473
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 161 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRR 262
+M E Q + P Q AQ Q GK H EP R
Sbjct: 985 EMGEPQGSTSAQPDEQLAQELAQEPGKQHQEPAR 1018
>SB_49753| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-30)
Length = 321
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 41 TKSRHDVFLEARSHFGVKRCWTTDGKIIV 127
TKS +V + AR +GV+R W+ ++++
Sbjct: 178 TKSIAEVLIVARGDWGVQRLWSNTFELLI 206
>SB_2704| Best HMM Match : TP2 (HMM E-Value=6.9)
Length = 351
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 161 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRR 262
+M E Q + P Q AQ Q GK H EP R
Sbjct: 178 EMEEPQGSTSAQPDEQFAQELAQEPGKQHQEPAR 211
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 161 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRR 262
+M E Q + P Q AQ Q GK H EP R
Sbjct: 71 EMEEPQGSTSAQPDEQLAQELAQEPGKRHQEPAR 104
>SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 26.2 bits (55), Expect = 9.5
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +2
Query: 47 SRHDVFLEARSHFGVKRCWTTDGKIIVLL-PDNKRSKIEQMFELQHLKTKFP-SAQKAQG 220
+R + L AR K WT +GK+ + D++ I + +L HLK + +Q+ +
Sbjct: 204 TRSCLALSARHDLKFKFIWTQNGKVFLRKNSDSQAVLISKSQDLLHLKQREDHDSQEVES 263
Query: 221 APQSSGKSHD 250
A + K+ D
Sbjct: 264 ANLTGTKAFD 273
>SB_53151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -1
Query: 377 RIDN*VFSVTSMNKFKIPPYYFRRVVLLPISRSAADFGAVLVRHEISQMTEELLALFEPR 198
R+ N + +TS +K ++ Y R L +S+S + + V +SQ + L L
Sbjct: 169 RVLNLMLDITSKHKHRLGQRYTRLFNQLSVSQSVSQSVSQSVSQSVSQSVSQSLTLIPVS 228
Query: 197 E 195
E
Sbjct: 229 E 229
>SB_35426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 41 TKSRHDVFLEARSHFGVKRCWTTDGKIIV 127
TKS +V + AR +GV+R W+ ++++
Sbjct: 116 TKSIAEVLIVARGDWGVQRLWSNTFELLI 144
>SB_22331| Best HMM Match : fn3 (HMM E-Value=7.1e-14)
Length = 908
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 41 TKSRHDVFLEARSHFGVKRCWTTDGKIIV 127
TKS +V + AR +GV+R W+ ++++
Sbjct: 55 TKSIAEVLIVARGDWGVERLWSNTFELLI 83
>SB_8182| Best HMM Match : ATP-synt_E (HMM E-Value=1.8)
Length = 520
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 149 SKIEQMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRRHQNQRQSEKSARGR 304
+K+E + Q KTK P K + G S EP++ + + S + AR R
Sbjct: 178 TKLECVGAAQKQKTKQPQNGKTNAGNINQGTSEAEPKK-RTPKNSTRGARKR 228
>SB_6427| Best HMM Match : RBM1CTR (HMM E-Value=0.42)
Length = 315
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 161 QMFELQHLKTKFPSAQKAQGAPQSSGKSHDEPRR 262
+M E Q + P Q AQ Q GK H EP R
Sbjct: 114 EMEEPQGSTSAQPDDQLAQELAQEPGKQHQEPAR 147
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,453,535
Number of Sequences: 59808
Number of extensions: 215962
Number of successful extensions: 805
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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