Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20032
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36)               29   5.4  

>SB_58047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 431 ACSSTLTAACFHRTDCKGL--YLPAPYESIPTSSLTAMSSVK 550
           AC  + +   F RTDC G+  YL   Y+ +P  S      V+
Sbjct: 304 ACEVSASPVFFDRTDCTGVYKYLRINYDCLPEESRVKFDDVR 345


>SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36)
          Length = 704

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 176 MFEDIKEIAKEYNIEKSCDKYMNV-DVVSSSWRCIRWACSRVE 301
           + E++ EI +  +I+++    +NV D++ SSW  +  AC   E
Sbjct: 282 VMEEVAEIPEVSDIDRNSSMKVNVMDLIESSWEQMEQACDTEE 324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,804,725
Number of Sequences: 59808
Number of extensions: 470686
Number of successful extensions: 1139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)