Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20026
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)               33   0.27 
SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)                   29   3.3  
SB_59201| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)                    29   4.4  
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.6  
SB_26507| Best HMM Match : Ala_racemase_N (HMM E-Value=0.39)           28   7.6  

>SB_10683| Best HMM Match : Stathmin (HMM E-Value=0.0011)
          Length = 299

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 20/78 (25%), Positives = 34/78 (43%)
 Frame = +2

Query: 260 EEIQEKLKAAEERRRSLEXXXXXXXXXXXXXXXXXSRIRSEQTNNFIVATKEALDAKMET 439
           E++Q+K  A++E    L                    I  EQ        +E +  KME 
Sbjct: 152 EKLQQKFAASKEIIEELRSAKEEKLQAHERRVRVAQSIAQEQIEQQSKLIEEKIMQKMEM 211

Query: 440 HEEKREAYINELRSRLKD 493
            +EKR++Y+  L++RL +
Sbjct: 212 TKEKRDSYMEALKTRLHE 229


>SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)
          Length = 1114

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 1    AYRS*SVCCE*FYIYYRFVCCDRRTQFSCFEV 96
            A+   S+ C   Y Y  F CCD  T+ S FE+
Sbjct: 935  AFTPPSLTCHYLYSYRTFQCCDLGTKISPFEM 966


>SB_59201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1326

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 5    IGVKVFVANNSTFIIGLSVVIVGRNSAV 88
            +GVK FV    T ++GL  ++VG ++ V
Sbjct: 1156 VGVKTFVVGVETLVVGLDTLVVGVDTDV 1183


>SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)
          Length = 834

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/69 (27%), Positives = 38/69 (55%)
 Frame = +1

Query: 415 GARRQDGDPRGKTRGLHQRAALPSQGSS*GR*KTRLTLEQQTAEVYKAIEDKMTTAADKR 594
           G+++Q    +GK + L   AA+P + +S    K    L++Q+  ++K I D++ T     
Sbjct: 212 GSQKQISKKKGKKKSLEASAAMPVKSAS--EEKEEQQLKEQSEAIWK-IRDELKTNCSLS 268

Query: 595 DENLKKMIE 621
           +  L++M+E
Sbjct: 269 E--LREMLE 275


>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 517 RLTLEQQTAEVYKAIEDKMTTAAD-KRDENLKKMIERLRET 636
           RL+ E + A + K +   M  A + KR ENL KM ++L ET
Sbjct: 349 RLSDEMKKAGLPKEVLSLMNDAREEKRSENLSKMEKKLSET 389


>SB_26507| Best HMM Match : Ala_racemase_N (HMM E-Value=0.39)
          Length = 195

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 553 KAIEDKMTTAADKRDENLKKMIERL 627
           K +  K+   A+KR ENL+K++ RL
Sbjct: 15  KTVLQKINEVAEKRPENLQKLVPRL 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,336,359
Number of Sequences: 59808
Number of extensions: 267150
Number of successful extensions: 1029
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)