Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20017
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_13947| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_41985| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_23155| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_45735| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 255  PLSRKHTKRISDNGRKSTRVGQWPWRRPSATA 350
            PLS  H ++  ++  +S+  G+WPW R  + A
Sbjct: 2520 PLSSTHERKTPESFSESSTNGEWPWGRRRSPA 2551


>SB_34203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 122 NWFQSCFRCLSYCKNCK*DTNF 57
           NW   CFRC   C +C  DT F
Sbjct: 32  NWHPDCFRC-EICNDCLADTGF 52


>SB_40348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = +3

Query: 129 CCNIPELGNPEPLAECSNPKLPGP-----CKDIQCVFEKSGFLTENKPLSRKHTKRISDN 293
           CCN      P   + C   ++P P     C+ +Q V +K G LT    LSR+  ++   N
Sbjct: 81  CCNSTSKVIPAIRSRCLGVRIPAPSVEEICQILQFVCKKEG-LTIPSELSRRIAEKSGRN 139

Query: 294 GRKS 305
            RK+
Sbjct: 140 LRKA 143


>SB_13947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 24/81 (29%), Positives = 36/81 (44%)
 Frame = +3

Query: 117 PISACCNIPELGNPEPLAECSNPKLPGPCKDIQCVFEKSGFLTENKPLSRKHTKRISDNG 296
           P S   N+  L   EPL E    KLP P + +   F+   FLT ++   +K  KR++   
Sbjct: 105 PPSEQANVINLTLLEPLEE---NKLPIPLERVSLEFDSPLFLTLSEQRVQKALKRLNPRK 161

Query: 297 RKSTRVGQWPWRRPSATALTK 359
               R+  + W+    T L K
Sbjct: 162 ACEQRL-PFIWKMADVTPLPK 181


>SB_41985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -3

Query: 372 YCLRSLSTQSLMAFSTATDQ--PSCSFAHCRRCVLYASLIRACFQLKSPTFRK 220
           YC R      ++  S +T    P+CSFA C+ C L    +  C  +K+  FRK
Sbjct: 301 YCPRPDCQSPVLVDSESTIGLCPACSFAFCKICRLGYHGVSPC-SIKNSEFRK 352


>SB_23155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 22/73 (30%), Positives = 32/73 (43%)
 Frame = +3

Query: 93  QAAKATLKPISACCNIPELGNPEPLAECSNPKLPGPCKDIQCVFEKSGFLTENKPLSRKH 272
           +A +  ++P +A   IP L  P PL++   P LP P  D          + + K   R+ 
Sbjct: 70  RAPRTVVRPATA---IPPL--PSPLSQAEKPLLPSPPTDTPFSVPSRPDIRKGK--RRRR 122

Query: 273 TKRISDNGRKSTR 311
               SD   KSTR
Sbjct: 123 LPMTSDKTPKSTR 135


>SB_45735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 318 DQPSCSFAHCRRCVLYASLIRACFQLKSPTFRKRIECPCKVQAAL 184
           + P   F  C+    YA   +A FQ+++PTF  ++    K+QAA+
Sbjct: 37  NHPKSLFKACQ----YAEATKATFQIENPTFNSKV---LKLQAAI 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,048,034
Number of Sequences: 59808
Number of extensions: 367501
Number of successful extensions: 1454
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)