Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30018
(894 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53961| Best HMM Match : Complex1_49kDa (HMM E-Value=0) 330 1e-90
SB_35939| Best HMM Match : RVT_1 (HMM E-Value=0.037) 33 0.41
SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_52623| Best HMM Match : RnaseH (HMM E-Value=0.7) 31 1.7
SB_15863| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_8313| Best HMM Match : Tim17 (HMM E-Value=1.3) 31 1.7
SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_35198| Best HMM Match : rve (HMM E-Value=8.1e-20) 30 2.9
SB_28182| Best HMM Match : RnaseH (HMM E-Value=1.8) 30 2.9
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 29 3.8
SB_24904| Best HMM Match : Op_neuropeptide (HMM E-Value=1.4) 29 3.8
SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30) 29 3.8
SB_21616| Best HMM Match : RVT_1 (HMM E-Value=0.00011) 29 3.8
SB_19382| Best HMM Match : rve (HMM E-Value=8.4e-26) 29 5.1
SB_11242| Best HMM Match : MAM (HMM E-Value=0) 29 5.1
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39) 29 5.1
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06) 29 6.7
SB_16238| Best HMM Match : Nucleos_tra2_C (HMM E-Value=0.71) 29 6.7
SB_27254| Best HMM Match : Toxin_28 (HMM E-Value=8.6) 29 6.7
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_53961| Best HMM Match : Complex1_49kDa (HMM E-Value=0)
Length = 417
Score = 330 bits (810), Expect = 1e-90
Identities = 171/257 (66%), Positives = 190/257 (73%), Gaps = 3/257 (1%)
Frame = +3
Query: 132 PDFVKQFEGPVMYPDESTKSL---KPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRL 302
P + + G VMYPDE++ +P+P EK V NM +NFGPQHPAAHGVLRL
Sbjct: 51 PGRLAEMTGTVMYPDENSAKWDIDEPIP--------EKGVTNMTINFGPQHPAAHGVLRL 102
Query: 303 VLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEK 482
VLELDGE V ADPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMM NEQ YSLAVEK
Sbjct: 103 VLELDGEVVVRADPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQAYSLAVEK 162
Query: 483 LLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYERV 662
LLNID+P RAK+IR LF EITRLLNHIM V THALDVGA+TPFFW+FEEREK
Sbjct: 163 LLNIDIPERAKWIRVLFGEITRLLNHIMGVTTHALDVGAMTPFFWMFEEREK-------- 214
Query: 663 SGARMHAAYIRPGGVSLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGV 842
DMPLGLMDDIY+F F +R+D+VE++LT NRIW QRT DIGV
Sbjct: 215 -----------------DMPLGLMDDIYQFIQTFPQRLDDVEEMLTNNRIWKQRTVDIGV 257
Query: 843 VTAQDALNYGFSGVMLR 893
V+ +DALNYGFSGVMLR
Sbjct: 258 VSVEDALNYGFSGVMLR 274
>SB_35939| Best HMM Match : RVT_1 (HMM E-Value=0.037)
Length = 548
Score = 32.7 bits (71), Expect = 0.41
Identities = 13/53 (24%), Positives = 30/53 (56%)
Frame = +3
Query: 735 DDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
D +++++ E D+VE++++T + + + + DA +YG GV+L+
Sbjct: 166 DTVWQWTEVQQEAFDKVEEMISTTPVLTFYDPNKAITVSADASSYGIGGVLLQ 218
>SB_31692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 31.5 bits (68), Expect = 0.95
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 449 QRAVLQSGRREAAEHRCSSAGQVHQNSVC 535
++ +L++GRR+A E C +A H N C
Sbjct: 397 KKKILENGRRDALEEHCKNAVHTHLNIAC 425
>SB_52623| Best HMM Match : RnaseH (HMM E-Value=0.7)
Length = 311
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = +3
Query: 735 DDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
D +++++ E D+V+++++T + + + + DA +YG GV+L+
Sbjct: 26 DTVWQWTEVQQEAFDKVKEMVSTTPVLTFYDPNKAITVSADASSYGIGGVLLQ 78
>SB_15863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 922
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = +3
Query: 735 DDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
D +++++ E D+V+++++T + + + + DA +YG GV+L+
Sbjct: 381 DTVWQWTEVQQEAFDKVKEMVSTTPVLAFYDPNKAITVSADASSYGIGGVLLQ 433
>SB_49565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1571
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 708 SLDMPLGLMDDIYEFSSKFAERIDEVEDVLTTNRIWV 818
SL LG+M+ + +F AER + D+L N WV
Sbjct: 597 SLRRFLGMMNQLMKFCPNLAERTQPLRDLLKKNSAWV 633
>SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 30.7 bits (66), Expect = 1.7
Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 1/109 (0%)
Frame = -2
Query: 893 PQHHTAEAVVERVLRSDHADVLGPLHP-DPVGGEHVLHLVDALGELRRELVDVVHQTQRH 717
P+ E E S + + G P D E + + L + R E + +RH
Sbjct: 142 PRTKPPEETKEAPAESRSSAIFGGAKPVDTTSKEREIE--EKLAKARLEEARQKEERERH 199
Query: 716 VKRNPSWSDVGGVHPGAADXXXXXXXXXXXLKQPEEGSERPHVERVRAD 570
+R+ W GG H G D ++ E S V R+ AD
Sbjct: 200 NERD-EWKRAGGEHRGRRDSNRSSDGDKQHPRRDSEKSTEDRVRRISAD 247
>SB_8313| Best HMM Match : Tim17 (HMM E-Value=1.3)
Length = 369
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = -2
Query: 887 HHTAEAVVERVLRSDHADVLGPLHPDPVGGEHVLHLVDALGELRREL 747
HHTAE++VE + R++ + L DP+ G+ L + D L L EL
Sbjct: 170 HHTAESIVETINRAESEILTAKL--DPLTGKIAL-MSDGLASLNAEL 213
>SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 976
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +3
Query: 477 EKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFYE 656
E+ + D+ A+ F+E + +H + V +A+ + F + ++E E + FYE
Sbjct: 799 ERSVEFDISCCAENSHVAFSEFFQARSHRLTVLNNAVSFPFVKYFIYEYQEAELTLHFYE 858
Query: 657 R 659
R
Sbjct: 859 R 859
>SB_35198| Best HMM Match : rve (HMM E-Value=8.1e-20)
Length = 745
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +3
Query: 735 DDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
D +++++ E D+V+ +++T + + V + DA +YG GV+L+
Sbjct: 180 DTVWQWTEVQQEAFDKVKGMVSTTPVLTFYDPNKAVTVSADASSYGIGGVLLQ 232
>SB_28182| Best HMM Match : RnaseH (HMM E-Value=1.8)
Length = 507
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +3
Query: 735 DDIYEFSSKFAERIDEVEDVLTTNRIWVQRTKDIGVVTAQDALNYGFSGVMLR 893
D +++++ E D+V+ +++T + + V + DA +YG GV+L+
Sbjct: 180 DTVWQWTEVQQEAFDKVKGMVSTTPVLTFYDPNKAVTVSADASSYGIGGVLLQ 232
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 407 PAVLRPSGLRVHDVQRAVLQSGRREAAEHRCSSAGQVHQNSVC-GDN 544
P P G R+ + R VL + ++E C S V ++ VC GDN
Sbjct: 2145 PVCSCPQGYRLENPYRCVLSNASCASSEFACESGQCVRKSFVCDGDN 2191
>SB_24904| Best HMM Match : Op_neuropeptide (HMM E-Value=1.4)
Length = 507
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +3
Query: 702 GVSLDMP-----LGLMDDIYEFSSKFAERIDEVEDVLTTNRIWV 818
GV D+P LG+++ + +F AER + D+L N WV
Sbjct: 15 GVPRDIPSLRRFLGMVNQLMKFCPNLAERTQPLRDLLKKNSAWV 58
>SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)
Length = 1084
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 723 LGLMDDIYEFSSKFAERIDEVEDVLTTNRIWV 818
LG+ + + +FSSK AE + D+ +T +W+
Sbjct: 1011 LGMTNQLGKFSSKLAEASKPLRDLPSTKNVWI 1042
>SB_21616| Best HMM Match : RVT_1 (HMM E-Value=0.00011)
Length = 1380
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +3
Query: 702 GVSLDMP-----LGLMDDIYEFSSKFAERIDEVEDVLTTNRIWV 818
GV D+P LG+++ + +F AER + D+L N WV
Sbjct: 642 GVPRDIPSLRRFLGMVNQLMKFCPNLAERTQPLRDLLKKNSAWV 685
>SB_19382| Best HMM Match : rve (HMM E-Value=8.4e-26)
Length = 684
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 723 LGLMDDIYEFSSKFAERIDEVEDVLTTNRIWV 818
LG+ + + +FSSK AE + D+ +T +W+
Sbjct: 83 LGMANQLGKFSSKLAEASKPLRDLPSTKNLWI 114
>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
Length = 348
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 401 PSPAVLRPSGLRVHDVQRAVLQSGRREAAEHRCSSAGQVHQNSVCGD 541
PSP+V R R HD +LQ R E+R + N C D
Sbjct: 4 PSPSVRRSGVRREHDSTSGLLQPQMRTRTENRGFDTEESRYNEPCHD 50
>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
Length = 841
Score = 29.1 bits (62), Expect = 5.1
Identities = 31/105 (29%), Positives = 50/105 (47%)
Frame = +3
Query: 378 LIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLN 557
L+ + Q L +++ L +VS+ C C +L +++ + I PLR + I T TR L
Sbjct: 174 LLHCSWHIQVL-FYEFLLFVSVGC--LC-ALTLDRYIAITQPLRYRLIMTR----TRSLV 225
Query: 558 HIMAVGTHALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAYI 692
I A + L+P FW F E + ERV A + A++
Sbjct: 226 AI-ATSWGVPGLLTLSPVFWRFRESQMTKNSCERVYRAIVIFAFV 269
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 425 TVEVRQGLGVCLVFDQFFSTTVQETYV-RICCTDCLSVQFQ 306
T+E+ + + LVFDQF T+Q YV + C C+ ++
Sbjct: 5118 TLEINHWVQITLVFDQFIG-TLQVYYVDSVACYTCIQTGYR 5157
>SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06)
Length = 825
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/85 (22%), Positives = 39/85 (45%)
Frame = -2
Query: 782 LVDALGELRRELVDVVHQTQRHVKRNPSWSDVGGVHPGAADXXXXXXXXXXXLKQPEEGS 603
L DA+ LR+E+ + + V+RNP ++ + D K+ E S
Sbjct: 479 LSDAIDYLRKEIRRIKDDSNEFVERNPK-IEIQDKSNESKDLTSNLLNEVKTCKEMLE-S 536
Query: 602 ERPHVERVRADRHDVVQ*AGYLRKQ 528
+R H+ ++ D+ D+ + +R++
Sbjct: 537 QRSHIRELQMDKRDIEEGYAKMRRE 561
>SB_16238| Best HMM Match : Nucleos_tra2_C (HMM E-Value=0.71)
Length = 304
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -2
Query: 887 HHTAEAVVERVLRSDHADVLGPLHPDPVGGEHVL 786
HHTAE++VE + R++ + L DP+ G+ VL
Sbjct: 33 HHTAESIVETINRAESKILTAKL--DPLTGKFVL 64
>SB_27254| Best HMM Match : Toxin_28 (HMM E-Value=8.6)
Length = 141
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -2
Query: 887 HHTAEAVVERVLRSDHADVLGPLHPDPVGGEHVL 786
HHTAE++VE + R+ + +L PDP+ G+ VL
Sbjct: 3 HHTAESIVETINRA-KSQIL-TAKPDPLTGKIVL 34
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 28.7 bits (61), Expect = 6.7
Identities = 19/85 (22%), Positives = 39/85 (45%)
Frame = -2
Query: 782 LVDALGELRRELVDVVHQTQRHVKRNPSWSDVGGVHPGAADXXXXXXXXXXXLKQPEEGS 603
L DA+ LR+E+ + + V+RNP ++ + D K+ E S
Sbjct: 457 LSDAIDYLRKEIRRIKDDSNEFVERNPK-IEIQDKSNESKDLTSNLLNEVKTCKEMLE-S 514
Query: 602 ERPHVERVRADRHDVVQ*AGYLRKQ 528
+R H+ ++ D+ D+ + +R++
Sbjct: 515 QRSHIRELQMDKRDIEEGYAKMRRE 539
>SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 28.3 bits (60), Expect = 8.9
Identities = 19/70 (27%), Positives = 27/70 (38%)
Frame = +3
Query: 69 KNIPAVHNVNSQRDGHRWFPDPDFVKQFEGPVMYPDESTKSLKPVPYNSIIKPAEKKVRN 248
KN P V ++ DF Q + P E +S KP +I+P K +
Sbjct: 350 KNKPTVIVAEKRKVPENVKTQEDFKIQEPNYAVQPVEDNQSSKPKKEPRLIRPKRNKPKG 409
Query: 249 MILNFGPQHP 278
L+ GP P
Sbjct: 410 KDLSEGPPRP 419
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,544,980
Number of Sequences: 59808
Number of extensions: 571040
Number of successful extensions: 1849
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1832
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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