Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30017
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)                 31   1.1  
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                31   1.1  
SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_49967| Best HMM Match : RBM1CTR (HMM E-Value=1.4)                   28   6.1  
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)                    28   6.1  
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)                 28   6.1  
SB_10888| Best HMM Match : Collagen (HMM E-Value=7.5)                  28   6.1  
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)                    28   8.0  

>SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)
          Length = 242

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
 Frame = +2

Query: 284 EPTSEPRRTSANTLVMLTR---DPAXXXXXXXXXXXXXQSHPHTLPARWPH-PHTLP 442
           EP ++P RT        TR   DP              Q  PHT P + PH PHT P
Sbjct: 135 EPHTDPTRTRHEPHTDTTRTHTDPTQTQHRPNTDPTQTQHRPHTDPTQTPHGPHTDP 191


>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 82  YNRVYSTVSPFVYKPGR---YVADPGRYDPSRDNSGRYIP 192
           YNR+ +   P++ +PGR   Y   PGR DP     GR  P
Sbjct: 670 YNRLQARDDPYIKQPGRDDPYNKQPGRDDPYIKQPGRDDP 709


>SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1205

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 490 IIRYDNDVVPEGYHYLYETENKILAEEAGKVENVGTEXEGIKVKGFYEYVG 642
           I+RYD + VP  Y      E++I  E   K +++     G+   GF+E +G
Sbjct: 491 IVRYDRNKVPSLYQLFKFIESRIEFELRTKHKSIFGYALGVIFAGFFEGIG 541


>SB_49967| Best HMM Match : RBM1CTR (HMM E-Value=1.4)
          Length = 334

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = +2

Query: 527 TTTCTRPRTRFSLKKPARSRTLAPXTKASRSRDSTNTLAPTVSPTE 664
           T +  R ++RF    P RS    P  +ASRSRD     APT+ P E
Sbjct: 262 TESTERRKSRFV--SPLRSSCRWPLGRASRSRD--GACAPTMPPPE 303


>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 260 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 349
           PVL     +P S PRR S     +LTR PA
Sbjct: 111 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 140


>SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 447 LAGNVCGCGHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKV 319
           L GN CG   L GN CG   +GN       GN +G+   +  V
Sbjct: 238 LYGNKCGTS-LYGNKCGTSLYGNKSGTSLYGNKSGNPPDVVAV 279


>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
          Length = 304

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 260 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 349
           PVL     +P S PRR S     +LTR PA
Sbjct: 86  PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 115


>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
          Length = 420

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 10  VFLAICLSMTVALAAETGKYTPFQYNRVYSTVSPFVYKP 126
           VFL   +S+TV + +  GKY P  YN   + ++ F + P
Sbjct: 132 VFLVWGISITVGVLSVVGKYEPLAYN--VTVIALFFFLP 168


>SB_10888| Best HMM Match : Collagen (HMM E-Value=7.5)
          Length = 208

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -1

Query: 444 AGNVCGCGHLAGNVCGCDWHGNGRLHDGQGNNAGS 340
           +G + G GH+AG+ C     G+GR+  G G+ AGS
Sbjct: 160 SGGMAGSGHMAGSGC---MAGSGRM-AGSGHMAGS 190


>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
          Length = 877

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 414 AGNVCGCDWHGNGRL-HDGQGN 352
           AG V  CDW G+G L  D +GN
Sbjct: 677 AGRVIACDWSGDGVLVFDSRGN 698


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,626,214
Number of Sequences: 59808
Number of extensions: 318656
Number of successful extensions: 828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)