Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30012X
(545 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.) 198 3e-51
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2) 29 3.3
SB_48085| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09) 28 5.7
SB_37369| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5) 28 5.7
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09) 28 5.7
SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08) 27 7.6
SB_35465| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 198 bits (482), Expect = 3e-51
Identities = 92/117 (78%), Positives = 106/117 (90%)
Frame = +1
Query: 193 PLGLSPKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAVVPYAAALIIRALKEPPRDRK 372
PLGLSPKKVGDDIAKAT DWKGLKITV LT+QNRQA+++VVP A++LII+ALKEPPRDRK
Sbjct: 34 PLGLSPKKVGDDIAKATQDWKGLKITVCLTIQNRQAKVSVVPSASSLIIKALKEPPRDRK 93
Query: 373 KQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPSHD 543
K KNIKHNGNI+L+DV +AK+MR RSMAR+LSG+VKEILGT QSVGCTV+G HD
Sbjct: 94 KVKNIKHNGNITLDDVTNVAKVMRPRSMARHLSGTVKEILGTCQSVGCTVDGMAPHD 150
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = +3
Query: 93 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKI 188
MPPKFDPNEI+ V LRC GGEVGAT+SLAPKI
Sbjct: 1 MPPKFDPNEIQYVYLRCTGGEVGATASLAPKI 32
>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1569
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = -3
Query: 369 TITRRLLKGSDDKGCCI-----GNNSYLGLSVLNCQLHSDLETLPVTCGLGNVITH 217
+++ + GSD+K CC G + LG+ + +HSD++ P+ L + H
Sbjct: 108 SLSSSMFTGSDNKLCCFFLGQDGEKAMLGIVYVLTHVHSDIQFCPLLPVLAALFLH 163
>SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)
Length = 671
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 148 AGKSVPHHLWPLKSIPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPY 321
AG V L P + PLGL PKK+ D ++ S KGL + +++++ + A +
Sbjct: 364 AGPFVTPPLVPFRVSPLGLVPKKLPGDFRLSHHLSYPKGLSVNDGISLEHSTVRYATIGD 423
Query: 322 AAALI 336
A + I
Sbjct: 424 AISKI 428
>SB_48085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/79 (17%), Positives = 34/79 (43%)
Frame = +1
Query: 286 QNRQAQIAVVPYAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARY 465
Q ++ V + A +++ + P+ + KN+ H + D + R+ + +
Sbjct: 74 QKMDTRVIAVLFVAIMVLSSTNALPKQKGSYKNMNHADFLKGLDRASSKRDCRDSHWSCF 133
Query: 466 LSGSVKEILGTAQSVGCTV 522
+ ++I TAQ+ C +
Sbjct: 134 FQSNYEDICSTAQAEECAL 152
>SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09)
Length = 969
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 148 AGKSVPHHLWPLKSIPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPY 321
AG V L P + PLGL PKK+ D + S KGL + +++++ + A +
Sbjct: 460 AGPFVTPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGD 519
Query: 322 AAALI 336
A + I
Sbjct: 520 AISKI 524
>SB_37369| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 148 AGKSVPHHLWPLKSIPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPY 321
AG V L P + PLGL PKK+ D + S KGL + +++++ + A +
Sbjct: 43 AGPFVTPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGD 102
Query: 322 AAALI 336
A + I
Sbjct: 103 AISKI 107
>SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5)
Length = 386
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 148 AGKSVPHHLWPLKSIPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPY 321
AG V L P + PLGL PKK+ D + S KGL + +++++ + A +
Sbjct: 258 AGPFVTPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGD 317
Query: 322 AAALI 336
A + I
Sbjct: 318 AISKI 322
>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
Length = 944
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 148 AGKSVPHHLWPLKSIPLGLSPKKVGDD--IAKATSDWKGLKITVQLTVQNRQAQIAVVPY 321
AG V L P + PLGL PKK+ D + S KGL + +++++ + A +
Sbjct: 439 AGPFVTPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGD 498
Query: 322 AAALI 336
A + I
Sbjct: 499 AISKI 503
>SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
Length = 421
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 282 CQLHSDLETLPVTCGLGNVI 223
C++HS ET P+T + N+I
Sbjct: 118 CKIHSFFETFPITINIANLI 137
>SB_35465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 27.5 bits (58), Expect = 7.6
Identities = 20/69 (28%), Positives = 27/69 (39%)
Frame = -3
Query: 333 KGCCIGNNSYLGLSVLNCQLHSDLETLPVTCGLGNVITHLFRRQTKRNGF*GPKMMWHRL 154
KG C N+SY L+V C L DL + +T ++ N W R
Sbjct: 47 KGHCCHNSSYTDLTVTLCVLSIDLTVTLCVFSIDLTVT-----RSSVNNMLQATFQWSRD 101
Query: 153 PRRHIANSR 127
R H+ SR
Sbjct: 102 RRYHLTASR 110
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,930,130
Number of Sequences: 59808
Number of extensions: 397067
Number of successful extensions: 922
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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