Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30010
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        224   5e-59
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.045
SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)          29   3.0  
SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10)                     29   3.0  
SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47)                    29   3.0  
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        29   3.9  
SB_8256| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              29   3.9  
SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)                      28   6.8  
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)               28   6.8  
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)                      28   9.0  
SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)               28   9.0  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   9.0  
SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)                   28   9.0  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  224 bits (548), Expect = 5e-59
 Identities = 105/151 (69%), Positives = 125/151 (82%)
 Frame = +3

Query: 111 QLLDEYPKCFIVGADNVGSQQMQQIRXSLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL 290
           Q LDEYPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RKAI+ HL+NNP LEKL
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60

Query: 291 LPHIKGNVGLVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGP*KTYFF 470
           LPHIKGN+G VFT+ DL +VR  ++ENKV APA+ G IAP+ V +PA NTGLGP KT FF
Sbjct: 61  LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFF 120

Query: 471 QALSIPTKISKGTIEIINDVHILKPGDKVGA 563
           QAL+IPTKI++GTIEIINDVH++K  +K+ A
Sbjct: 121 QALAIPTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 35.5 bits (78), Expect = 0.045
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +3

Query: 225 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGLVFTRGDL 341
           K T++RK +K HLDN P L K LP + G +  + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205


>SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 352 VTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVH 453
           V +C R        PVP PH ++S  PT P SVH
Sbjct: 2   VVSCPRLFLDPMPAPVPRPHARASASPTHPTSVH 35


>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
          Length = 765

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +1

Query: 325 SPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVHRKPISSKLFPSLPKFQR 504
           S + TS  ++   WR K    L  + L    SS P +TPAS+     ++ L PSL   Q 
Sbjct: 561 SLSPTSESAMLQNWRQKLERPLTTLKLNQPDSS-PASTPASIPESANNTPLHPSLSSKQE 619

Query: 505 VLLKSS 522
             +  S
Sbjct: 620 TNVPKS 625


>SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
 Frame = +3

Query: 372 KVQAPAR--PGAIAPLSVVIPAHNTGLGP*KTYFFQALSIPTKISKGTIEIINDVHILKP 545
           KV  P+   P AI P     P+ N    P    + +       +S G +++ + V I++ 
Sbjct: 72  KVYEPSEKDPSAIPPFLAYSPSGNVTGDPVYANYGRVEDFKHLLSNG-VQVKDRVVIMRY 130

Query: 546 GDKVGASEATLLNMLNISPFSYGLVGKQVYDSGTIFAPEILDI 674
           G     S  +L      + + YG +G  +Y     +AP   D+
Sbjct: 131 GRAYRGSMKSLFRTQVANAYRYGAIGALIYTDPKKYAPYGTDL 173


>SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10)
          Length = 326

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
 Frame = +3

Query: 372 KVQAPAR--PGAIAPLSVVIPAHNTGLGP*KTYFFQALSIPTKISKGTIEIINDVHILKP 545
           KV  P+   P AI P     P+ N    P    + +       +S G +++ + V I++ 
Sbjct: 163 KVYEPSEKDPSAIPPFLAYSPSGNVTGDPVYANYGRVEDFKHLLSNG-VQVKDRVVIMRY 221

Query: 546 GDKVGASEATLLNMLNISPFSYGLVGKQVYDSGTIFAPEILDI 674
           G     S  +L      + + YG +G  +Y     +AP   D+
Sbjct: 222 GRAYRGSMKSLFRTQVANAYRYGAIGALIYTDPKKYAPYGTDL 264


>SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47)
          Length = 715

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 218 HGKKHYDAQSHQRPPGQQSSPRE-TVATHQGQRWLSVHPRRP 340
           +G     A SH  PP QQS+P    +   QGQ  + + P+ P
Sbjct: 171 YGLNQESAASHPCPPSQQSAPAPGNIQEGQGQGLVELPPKGP 212


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 527 IVDDFNSTL*NFGRDGKSLEEIGFLWTEAGVVGGNDD*QWG 405
           I+D  NS   +  R  K+LEE G L+  +GV GG +  ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184


>SB_8256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 624

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 697 LARRSSGLMSRISGAKIVPESYTCLPTRPYENGEMFNMLRRVASE 563
           +A R  G M+  +   + P+ YTC P  P E  E+  + R +  E
Sbjct: 75  VAHRPRGGMAAKTQGILAPKGYTCRPIVPAEKAELLPVARAMHRE 119


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 433 WAGMTTDNGAMAPGRAGAWTLFSNSL 356
           W+  T D     PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619


>SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)
          Length = 152

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 180 QIRXSLRGSSIVLMGKNTMMRKAIKDHLDNNP 275
           Q+R  L   S +L+G NT+++ A+ D L   P
Sbjct: 23  QVRPGLTALSTILLGANTVIQAALPDILAKTP 54


>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
          Length = 509

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 370 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 260
           FS+S + T         KP    +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500


>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
          Length = 939

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -3

Query: 664 ISGAKIVPESYTCLPTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL--MISIVPFEIL 491
           +S + +VP+SY    TRP  NG+   +  + A E P+L+  F+    L  +I  +   I 
Sbjct: 162 LSVSNLVPDSYFDAFTRPIINGK---VEEKTAGEGPSLATMFEDDRHLQGVIQSIRDAIS 218

Query: 490 VGMERAWK 467
              + AWK
Sbjct: 219 NAFDMAWK 226


>SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 598 LHSHMVLLVSRYMILELFLHLKFWTSNQRIS 690
           L S ++++V RY+ +   LH + W S +++S
Sbjct: 145 LLSMLLMMVDRYIAIAWGLHYRIWKSQRKVS 175


>SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)
          Length = 907

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +1

Query: 418 SSFPPTTPASVHRKPISSKL---FPSLPKFQRVLLKSSTMYTS*SPVTRLELLKPPFST 585
           S+ P   PA   +KP+ ++     PS P  +RVL+ SS ++     ++ +E+   PFST
Sbjct: 396 STTPRNKPAKPAKKPVVARTDHGCPS-PSAKRVLVSSSFVHLDGKSLSTIEVHFLPFST 453


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 125  VPKMFHRGCR*RGLATDAADPYXAT-WLQYRAHGKKHYDA 241
            VPKMFH     RG+ T+A  P   T +L+ R  G++  +A
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRRGLNA 3895


>SB_24756| Best HMM Match : 7tm_1 (HMM E-Value=2e-08)
          Length = 690

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
 Frame = +3

Query: 93  YFIKIIQLLDEYPKCFIVGADNVGSQQMQQIRXSLRGSSIVLMGKNTMMRKAIKDHLDNN 272
           Y +  I+L+  Y    I+G  ++G  ++ Q    L  +    + K      AIK  L  N
Sbjct: 122 YGLSSIELVPSY---LILGEASIGLGKLSQAEEYLAQAEWTAL-KTPGCDNAIKSRLYRN 177

Query: 273 PALEKLLPHIKGNVG--LVFTRGDLVEV----RDKLLENKVQAPARPGAIAP 410
             L   L   KGN    L     D+ ++      KL+  + Q PA+P  I P
Sbjct: 178 LGL---LNAAKGNFSDALTLLADDVTDIWYEHLSKLVGQRTQTPAKPSGIGP 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,743,056
Number of Sequences: 59808
Number of extensions: 588235
Number of successful extensions: 1634
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)