Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30002
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)                   34   0.14 
SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)                   32   0.57 
SB_27386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_52487| Best HMM Match : PLAT (HMM E-Value=0)                        28   7.0  
SB_41747| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_16746| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_44206| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_34555| Best HMM Match : EGF (HMM E-Value=7.00649e-45)               28   9.2  
SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)                   28   9.2  
SB_5092| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  

>SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)
          Length = 501

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
 Frame = +3

Query: 237 RDPVFWMIMKRVCNIFTVFKNMLPKYTREQFSFPGVKVEKITTD-ELVTFVDEYDMDISN 413
           R+P FW      C +F V    +    +      G+ VE    D +LV F D  +  I +
Sbjct: 260 REP-FWPAQVEYCKMFAVHHTQIQGCAKAL----GISVESEEEDYQLVDFQDVSNTLIPD 314

Query: 414 AMYLDATEMQNKTSDMTFMARMRRLNHHPFQVSIDVMS--DKTVDAVVRIFLGPKY 575
             +L A  M+N   D T   +  R      Q S+D++    ++   + +IF G KY
Sbjct: 315 MSHLSAETMKNDEEDDTTPRKSSRQCKQVCQYSLDILPYIRQSKPILRQIFEGKKY 370


>SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)
          Length = 509

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = -1

Query: 689 HGATDDGVLSVDQFVHKAVQLEHVEAFVVDAHEPAHAVVLG-TQEDADHSIDSFVGHDIN 513
           HG + + + S  Q  H  V  +H    V D H+  H  V   T+    HS ++      +
Sbjct: 339 HGHSTNTITSRSQHQHDHVTAQHQHDHVTDQHQHDHVTVTAPTRSRHGHSTNTITSRSQH 398

Query: 512 RHLERMVIEAAHAGHKGH 459
           +H   + + A      GH
Sbjct: 399 QH-NHVTVTAPTRSRHGH 415


>SB_27386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 272 NSFHDHPEDRIAETGSVHVQGSRHVGVLVHVVLAI 168
           ++ H HPED + + GSV++        L   V+A+
Sbjct: 56  STHHQHPEDLVYDAGSVYLGTKTSPASLARAVMAV 90


>SB_52487| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 441

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
 Frame = +3

Query: 426 DATEMQNKTSDMTFMARMRRLNHHPFQVSIDVMSDKTVDAVVRIFL---GPKYDCMGRLM 596
           DA +++ KTS+   ++ +R L    + V +    +K       +FL   G   D   R  
Sbjct: 298 DAVQLECKTSEKPRLSALRELQPVQYLVEVRTADEKYAGTDANVFLTIYGTNGDTGKR-- 355

Query: 597 SVNDKRLDMFE---LDSFMYKLVN-GKNTIVRSSMDMQGF 704
            +  K +D+FE    D F  + ++ G+ T +R   D +GF
Sbjct: 356 PLTKKFVDLFERGKTDDFKLEALDLGQLTRLRIEHDNKGF 395


>SB_41747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +3

Query: 219 MYTTCLRDPVFWMIMKRV--CNIFTVFKNMLPKYTREQFSFPGVKVEKITTD 368
           M+TT      +W +  RV  C I   F+N   + T      PG+  + + TD
Sbjct: 279 MFTTLDACSGYWQVEDRVRSCQICNAFRNQQQRETLHPHDLPGLPWQVVGTD 330


>SB_16746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 566 SQVRLHGQAHERQRQTPRHVRAGQLYVQTGQRK 664
           +Q +LH +  E Q+Q PR VR  Q  +Q   R+
Sbjct: 12  AQQQLHRRVREAQQQLPRRVRGAQQQLQRRVRE 44


>SB_44206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
 Frame = +3

Query: 237 RDPVFWMIMK-------RVCNIFTVFKNMLPKYTREQFSFPGVKVEKITTDELVTFVDEY 395
           RD VFW  M        R C I   F+N   + T      PG+ V  + TD L  F    
Sbjct: 420 RDYVFWPSMTAHIKDRVRSCQICNAFRNQQQRETLHPHDLPGLPVAGVGTD-LFEFAGHS 478

Query: 396 DMDI 407
             D+
Sbjct: 479 PTDV 482


>SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1881

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 277 TSSPFSRTCSRNILANSSASPESKWRKLPPMSWSHSLMS 393
           +SS FSR+ S    + SS    + WR L  +SW+ S+ +
Sbjct: 593 SSSRFSRSSSSISDSLSSLRSRASWRLLSDISWTRSVFT 631


>SB_34555| Best HMM Match : EGF (HMM E-Value=7.00649e-45)
          Length = 979

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -1

Query: 332 AELFASIFREHVLENGEDVANSFHDHPEDRIAETGSVHV-QGSRHVGVLVHVVLAIA 165
           +E+  S+  +  L+  +   ++ H HPED   + GSV++   S HV  ++  ++ +A
Sbjct: 65  SEVCQSVNYDTTLKTCQTSISTRHQHPEDLEEKAGSVYIGSKSHHVNPILARMMDLA 121


>SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)
          Length = 292

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 137 LDQLDEENAELWPIQHGQVHLRADFLGHV 223
           L  LD   A +WP++H Q+H R  ++  V
Sbjct: 118 LISLDRMFATVWPLRHRQIHPRMYYISSV 146


>SB_5092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 194 HLRADFLGHVHYLSPRSCLLDDHETSLQ-HLHRFQEHAPEIYSRTVQL 334
           H+    L H H ++ R+  L DH T    H+ R  +   +I +RTV L
Sbjct: 106 HISRHALSHSH-ITARTVTLADHGTHCHTHISRHAQSRQQIMARTVSL 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,762,951
Number of Sequences: 59808
Number of extensions: 503392
Number of successful extensions: 1677
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1674
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)