Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0031
         (821 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2058| Best HMM Match : Lactamase_B (HMM E-Value=1.7e-16)            79   6e-15
SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)                       31   1.1  
SB_3029| Best HMM Match : VWA (HMM E-Value=3.9e-05)                    29   6.0  
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   28   8.0  
SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_2058| Best HMM Match : Lactamase_B (HMM E-Value=1.7e-16)
          Length = 338

 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 37/74 (50%), Positives = 51/74 (68%)
 Frame = +2

Query: 509 ALTKKVEHNTKFKIGNLNVQCLFTPCHTTGHICYFVTAPEEGNDSVVFTGGYTLLRRMWA 688
           AL+KKV H+ +FK+G+L+V+CLFTPCHT+GHIC+ VT  + G  + VFTG  TL      
Sbjct: 202 ALSKKVSHDEEFKVGSLHVKCLFTPCHTSGHICFHVTG-DAGKPTAVFTGD-TLFSGGCG 259

Query: 689 GSLKGTADQMYKAL 730
              +G+  +MY AL
Sbjct: 260 RFFEGSPPEMYSAL 273



 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 30/48 (62%), Positives = 40/48 (83%)
 Frame = +3

Query: 258 NMDVKILPALQDNYMYLIVDKATKEAAIVDPVEPKTVLKAVEEQGVNL 401
           +M +++LPAL DNYMYL+VD  TKEAA+VDPVEP+ V+ A +E+GV L
Sbjct: 76  DMKIRLLPALSDNYMYLLVDPKTKEAAVVDPVEPEKVVTAFQEEGVRL 123



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 32/84 (38%), Positives = 41/84 (48%)
 Frame = +3

Query: 438 AGGNEDLIKERPGLIVYGGDDRIGPSQKKLSTIQSLKSVT*MYSVFLHPVIQLGIYVIS* 617
           AGGNE L+K   GL VYGGD+RIG   KK+S  +  K  +        P    G ++   
Sbjct: 178 AGGNEGLVKLVSGLTVYGGDERIGALSKKVSHDEEFKVGSLHVKCLFTPCHTSG-HICFH 236

Query: 618 LLQKKVTIQLSSPGDTLFLGGCGQ 689
           +            GDTLF GGCG+
Sbjct: 237 VTGDAGKPTAVFTGDTLFSGGCGR 260


>SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)
          Length = 1392

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 103 NFILFKKTY-SMLARFVNSLPSGLSQRITKLYFRALIRNQREAHSS 237
           N+I+ KKT+ SM+ +   +  S +    +  YF+AL+   + AH +
Sbjct: 788 NYIVLKKTFLSMMVKITKADDSNIDNNQSLAYFQALLNFSKSAHET 833


>SB_3029| Best HMM Match : VWA (HMM E-Value=3.9e-05)
          Length = 160

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 450 EDLIKERPGLIVYGGDD--RIGPSQKKLSTIQSLKSV 554
           ED I +R GL+VY G+   R   +  K   +QSLK+V
Sbjct: 64  EDRINDRIGLVVYAGESYTRTPITSDKTVILQSLKTV 100


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -2

Query: 616  YEITYMPSCMTGCKKTLYIQVTDFKLCIVLNFFCEGPILSSP 491
            +++ Y  S +T CK T+ + V+D+K  IVL   C+ P LS P
Sbjct: 947  WQVHYYLSKVT-CKNTVSV-VSDWKYVIVLAHACKFPKLSIP 986


>SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 312  VDKATKEAAIVDPVEPKTVLKAVEE 386
            +DK+    AIVDP + K+V K VEE
Sbjct: 942  LDKSIDMGAIVDPSQQKSVAKMVEE 966


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,816,449
Number of Sequences: 59808
Number of extensions: 468395
Number of successful extensions: 955
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)