SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0025
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48907| Best HMM Match : Transket_pyr (HMM E-Value=0)               112   3e-25
SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0)               100   1e-21
SB_6655| Best HMM Match : No HMM Matches (HMM E-Value=.)               65   4e-11
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.36 
SB_16665| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.10001e-40)     31   0.83 
SB_51378| Best HMM Match : PAN (HMM E-Value=0.00096)                   29   2.5  
SB_26224| Best HMM Match : VWD (HMM E-Value=0)                         28   5.8  
SB_44017| Best HMM Match : SKIP_SNW (HMM E-Value=0)                    28   5.8  

>SB_48907| Best HMM Match : Transket_pyr (HMM E-Value=0)
          Length = 548

 Score =  112 bits (269), Expect = 3e-25
 Identities = 59/131 (45%), Positives = 77/131 (58%)
 Frame = +2

Query: 257 RTVPTATVFYPSDAVSTERAVELAANTRGICYIRTSRPNTAILYPNDEVFKVGQAKVLRQ 436
           R +P  TVFYPSDAVS ERAVELAANT G+ +IR SRP T ++Y N+E F +G+AK++RQ
Sbjct: 366 RALPNCTVFYPSDAVSCERAVELAANTTGMTFIRASRPATPVIYGNEETFTIGKAKIVRQ 425

Query: 437 SAKDRVLLIGAGITLHXXXXXXXXXXXXVWRLVCWTRSPSSHWTRLQFWRMLXAAEGRIL 616
           SA D+VL+IGAG+TL                +            +        A  G+++
Sbjct: 426 SADDKVLVIGAGVTLAEALKAADELASSGVSVRVMDPFTIKPLDKDAIVEHAKACGGKVV 485

Query: 617 VVEDHYXAGSI 649
           VVEDHY  G I
Sbjct: 486 VVEDHYYEGGI 496



 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 48/83 (57%), Positives = 55/83 (66%)
 Frame = +3

Query: 6   AYPERYVECFIAEQNLVGVATGAACRDXXXXXXXXXXXXXXXXXDQIRMGAISQSNINLA 185
           A+P+R++ECFIAEQN+VGVA G A R                  DQIRM A+S S IN+ 
Sbjct: 282 AHPDRFIECFIAEQNMVGVAVGCATRGRTIPFVSTFAAFFSRAYDQIRMAAVSDSTINIM 341

Query: 186 GSHCGVSIGEDGPSQMGLEDLAM 254
           GSH G SIGEDG SQMGLEDLAM
Sbjct: 342 GSHVGCSIGEDGASQMGLEDLAM 364



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = +1

Query: 508 MKKEGVEARVLDPFTIKPLDEAAVLENAXGC*GK 609
           +   GV  RV+DPFTIKPLD+ A++E+A  C GK
Sbjct: 450 LASSGVSVRVMDPFTIKPLDKDAIVEHAKACGGK 483


>SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0)
          Length = 562

 Score =  100 bits (239), Expect = 1e-21
 Identities = 47/84 (55%), Positives = 56/84 (66%)
 Frame = +3

Query: 3   NAYPERYVECFIAEQNLVGVATGAACRDXXXXXXXXXXXXXXXXXDQIRMGAISQSNINL 182
           NA+P+R++ECFIAEQN+VGVA G A R                  DQIRM A+SQS++N 
Sbjct: 258 NAHPDRFIECFIAEQNMVGVAVGCATRGRAIPFVSTFAAFLCRASDQIRMAAVSQSSVNF 317

Query: 183 AGSHCGVSIGEDGPSQMGLEDLAM 254
            GSH G SIGEDG SQM LED+AM
Sbjct: 318 VGSHVGCSIGEDGASQMALEDMAM 341



 Score = 76.6 bits (180), Expect(2) = 4e-21
 Identities = 34/57 (59%), Positives = 45/57 (78%)
 Frame = +2

Query: 257 RTVPTATVFYPSDAVSTERAVELAANTRGICYIRTSRPNTAILYPNDEVFKVGQAKV 427
           R +P + VFYPSDAV+ ERAVELAAN  GI + R +RP++A++Y NDE F +G+AKV
Sbjct: 343 RALPGSVVFYPSDAVACERAVELAANYPGITFTRATRPDSAVIYANDEPFAIGKAKV 399



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 16/34 (47%), Positives = 25/34 (73%)
 Frame = +1

Query: 508 MKKEGVEARVLDPFTIKPLDEAAVLENAXGC*GK 609
           ++ EG+  R+LDPFT+KP+D+A ++ NA    GK
Sbjct: 463 LELEGIHVRILDPFTVKPIDKAGIVANAKAANGK 496



 Score = 42.7 bits (96), Expect(2) = 4e-21
 Identities = 26/83 (31%), Positives = 38/83 (45%)
 Frame = +2

Query: 401 VFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXXVWRLVCWTRSPSSHWTRLQF 580
           +F +G+AKV+RQS  D VL+I AG+TL                +            +   
Sbjct: 427 MFDIGKAKVVRQSEDDHVLVIAAGVTLDEAMKAANHLELEGIHVRILDPFTVKPIDKAGI 486

Query: 581 WRMLXAAEGRILVVEDHYXAGSI 649
                AA G+++VVEDHY  G +
Sbjct: 487 VANAKAANGKVVVVEDHYYEGGL 509


>SB_6655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 51/145 (35%), Positives = 67/145 (46%), Gaps = 14/145 (9%)
 Frame = +2

Query: 257 RTVPTATVFYPSDAVSTERAVELAANTRGI--CYIRTSRP--NTAILYPN---------- 394
           R +P  TVFYPSDAVS ERAVELAANT G   C ++   P  N   +             
Sbjct: 17  RALPNCTVFYPSDAVSCERAVELAANTTGASHCGLKLMWPVINERSMCSGSPGHDRGRRF 76

Query: 395 DEVFKVGQAKVLRQSAKDRVLLIGAGITLHXXXXXXXXXXXXVWRLVCWTRSPSSHWTRL 574
           D+      A+++RQSA D+VL+IGAG+TL                +            + 
Sbjct: 77  DQTNLRPMAEIVRQSADDKVLVIGAGVTLAEALKAADELASSGVSVRVMDPFTIKPLDKD 136

Query: 575 QFWRMLXAAEGRILVVEDHYXAGSI 649
                  A  G+++VVEDHY  G I
Sbjct: 137 AIVEHAKACGGKVVVVEDHYYEGGI 161



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 19/34 (55%), Positives = 25/34 (73%)
 Frame = +1

Query: 508 MKKEGVEARVLDPFTIKPLDEAAVLENAXGC*GK 609
           +   GV  RV+DPFTIKPLD+ A++E+A  C GK
Sbjct: 115 LASSGVSVRVMDPFTIKPLDKDAIVEHAKACGGK 148



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +3

Query: 213 EDGPSQMGLEDLAM 254
           EDG SQMGLEDLAM
Sbjct: 2   EDGASQMGLEDLAM 15


>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2051

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 264 CLLLLSSTRLMQSLQSVQ*N*QPTLEASVTSELLDPTRLSCTPM 395
           CL L+S ++ + +   VQ   QP    S    +LDPT  SCTP+
Sbjct: 478 CLDLVSKSQSVSNFGVVQLFTQPHPPQSTCCAMLDPTSFSCTPL 521


>SB_16665| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.10001e-40)
          Length = 935

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 189 SHCGVSIGEDGPSQMGLEDLAMSVQCLLLLSSTRLMQSLQSVQ 317
           S CGV + E G SQ G++ +    QC +LL   +  + +Q +Q
Sbjct: 830 SQCGVQVIEGGESQRGVQFIEGLSQCGVLLIEGKSQRGVQLIQ 872


>SB_51378| Best HMM Match : PAN (HMM E-Value=0.00096)
          Length = 279

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 250 PCPYSAYCYCLLPV*CSLYRACSRISSQHSRHLLHQN 360
           PCP+SA   C      +L +   +I+S  +RH L +N
Sbjct: 145 PCPHSANSICTAQYPQTLAKIIEKIASMQTRHYLVEN 181


>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
          Length = 736

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 236 TGGPCHVRTVPTATVFYPSDAVSTERAVELAANTRGIC 349
           TG  C   T+   ++  P  +V   RAV +A+ T G C
Sbjct: 179 TGHRCEQETIMADSLNSPHTSVRAARAVTIASRTMGAC 216


>SB_44017| Best HMM Match : SKIP_SNW (HMM E-Value=0)
          Length = 754

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 104 LHICCFLHKNF*PNSY--GCY*SVQH*PC 184
           LH CC++ KN+    Y  GCY SV   PC
Sbjct: 88  LHPCCYIEKNWLAEKYSGGCYVSVV--PC 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,971,550
Number of Sequences: 59808
Number of extensions: 430712
Number of successful extensions: 1256
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -