Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0021
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             110   1e-24
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          100   9e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 74   9e-14
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.089
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              33   0.15 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.36 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              32   0.47 
SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)                    31   1.1  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   1.9  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               29   2.5  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_48595| Best HMM Match : Transposase_29 (HMM E-Value=3.5)            28   7.7  
SB_14242| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  110 bits (264), Expect = 1e-24
 Identities = 49/82 (59%), Positives = 63/82 (76%)
 Frame = +1

Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 435
           + L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQTR
Sbjct: 3   VGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTR 62

Query: 436 EHALLAFTLGVKQLIVGVNKMD 501
           EHA+L  +LGV QLIV +NK+D
Sbjct: 63  EHAILVRSLGVTQLIVAINKLD 84


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  100 bits (240), Expect = 9e-22
 Identities = 43/77 (55%), Positives = 58/77 (75%)
 Frame = +1

Query: 271 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 450
           F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+L
Sbjct: 217 FDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAML 276

Query: 451 AFTLGVKQLIVGVNKMD 501
           A T GVK L++ VNKMD
Sbjct: 277 AKTAGVKHLVILVNKMD 293



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = +3

Query: 120 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 239
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 11/24 (45%), Positives = 21/24 (87%)
 Frame = +3

Query: 516 YSEPRFEEIKKEVSSYIKKIGYNP 587
           ++E R+EEIK +++ ++KK+G+NP
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNP 322


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +3

Query: 36  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 182
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 32/34 (94%), Positives = 33/34 (97%)
 Frame = +1

Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 357
           IALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 27  IALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +3

Query: 180 MGKGSFKYAWVLDKLKAERE 239
           MGKGSFKYAWVLDKLKAERE
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +1

Query: 292 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 471
           +T ID PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129

Query: 472 QLIVGVNKMD 501
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +1

Query: 301 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 480
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 481 VGVNKMD 501
           +  NK+D
Sbjct: 123 ILQNKID 129


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 36  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 131
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 286 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 396
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 229 LSVXRYHNRIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 381
           L+  R   ++   +F+     + IID PGH  F      G+S  D A+L+V
Sbjct: 659 LNAIRIQTKMVKEEFDIKIPGLLIIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)
          Length = 405

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 294 NIVLASFELP-ESNTIVIPXHAQPLVCPIP 208
           N VL  F+LP +SNT+V+P  +Q  + P P
Sbjct: 173 NDVLTEFDLPPQSNTVVVPPTSQRPILPAP 202


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 292 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 396
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 51  THINIVVIGHVDSGKSTTTGHLIY 122
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = +1

Query: 256 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 435
           I  +  +     +  +D PGH  F      G    D  +++VAA             QT+
Sbjct: 128 IGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTK 180

Query: 436 EHALLAFTLGVKQLIVGVNKMD 501
           E    A   GV  +I  +NK+D
Sbjct: 181 EAISHAQAAGV-PIIFAINKID 201


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 60   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 158
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +1

Query: 466 VKQLIVGVNKMDSTDHHTVSPDLRKSRRKY--PHTSRRLATTQLLSLSCPFLDGTETTCW 639
           V Q+  G+N + S    T+SP+ R   RK   P+   R++ T+L  ++ P+L  T    W
Sbjct: 229 VHQMSRGLNAIHSKYMATLSPECRDVLRKLLEPNPQLRISLTEL--MAHPWL--TSKGTW 284

Query: 640 SLQP 651
            L+P
Sbjct: 285 PLEP 288


>SB_48595| Best HMM Match : Transposase_29 (HMM E-Value=3.5)
          Length = 565

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -3

Query: 584 VVANLLDV*GYFLLDFLKSGLTVWWSVESI 495
           V+  + +  G+ L +F+K G+ VW++V++I
Sbjct: 215 VLTRMRETGGFCLPEFVKRGVNVWFAVDNI 244


>SB_14242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 193 PSNMLGYWTN*RLSVXRYHNRIALWKF-ETSKYYVTIIDAPG 315
           P++  GY       + R HN I +WK  ET KY +    A G
Sbjct: 138 PTSTDGYKATHLNGLVRLHNGIQIWKTPETGKYVIEAFGASG 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,713,704
Number of Sequences: 59808
Number of extensions: 426721
Number of successful extensions: 1234
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)