Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0024
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48794| Best HMM Match : Transposase_5 (HMM E-Value=2.3)             28   6.8  
SB_40943| Best HMM Match : Exo_endo_phos (HMM E-Value=9.2e-07)         28   6.8  
SB_27969| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_23032| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23)                 28   6.8  
SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36)                 28   6.8  
SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_32853| Best HMM Match : RVT_1 (HMM E-Value=1.6)                     28   6.8  
SB_19613| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_14508| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_48794| Best HMM Match : Transposase_5 (HMM E-Value=2.3)
          Length = 280

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 505 YKTRSITKCWYNLMNDLYAPLNAGSIDKI 591
           Y  R+  K +YN +N++Y P  +GS+  +
Sbjct: 234 YADRNDMKNFYNSLNEIYGPTTSGSLSPL 262


>SB_40943| Best HMM Match : Exo_endo_phos (HMM E-Value=9.2e-07)
          Length = 550

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 505 YKTRSITKCWYNLMNDLYAPLNAGSIDKI 591
           Y  R+  K +YN +N++Y P  +GS+  +
Sbjct: 415 YADRNDMKNFYNSLNEIYGPTTSGSLSPL 443


>SB_27969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 505 YKTRSITKCWYNLMNDLYAPLNAGSIDKI 591
           Y  R+  K +YN +N++Y P  +GS+  +
Sbjct: 77  YADRNDMKNFYNSLNEIYGPTTSGSLSPL 105


>SB_23032| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23)
          Length = 855

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 505 YKTRSITKCWYNLMNDLYAPLNAGSIDKI 591
           Y  R+  K +YN +N++Y P  +GS+  +
Sbjct: 176 YADRNDMKNFYNSLNEIYGPTTSGSLSPL 204


>SB_58157| Best HMM Match : RVT_1 (HMM E-Value=1.6e-36)
          Length = 1092

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 505 YKTRSITKCWYNLMNDLYAPLNAGSIDKI 591
           Y  R+  K +YN +N++Y P  +GS+  +
Sbjct: 433 YADRNDMKNFYNSLNEIYGPTTSGSLSPL 461


>SB_57293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1395

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 505 YKTRSITKCWYNLMNDLYAPLNAGSIDKI 591
           Y  R+  K +YN +N++Y P  +GS+  +
Sbjct: 473 YADRNDMKNFYNSLNEIYGPTTSGSLSPL 501


>SB_32853| Best HMM Match : RVT_1 (HMM E-Value=1.6)
          Length = 358

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 505 YKTRSITKCWYNLMNDLYAPLNAGSIDKI 591
           Y  R+  K +YN +N++Y P  +GS+  +
Sbjct: 16  YADRNDMKNFYNSLNEIYGPTTSGSLSPL 44


>SB_19613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 505 YKTRSITKCWYNLMNDLYAPLNAGSIDKI 591
           Y  R+  K +YN +N++Y P  +GS+  +
Sbjct: 204 YADRNDMKNFYNSLNEIYGPTTSGSLSPL 232


>SB_14508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1392

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = -2

Query: 483 RSVVLRTCQI-KSI*VVYYQRWQSVHLDKKNVIDMSIQIDFNIIVSFKEYGSKPALNKG* 307
           RSV   TCQ+ +S+ ++     QS +L  ++V  +S Q+    +  F+   S   L +  
Sbjct: 640 RSVSRITCQVGQSVVLLVRSVSQSYYLSVRSVSRISCQVSQPTVSLFRSVQSVVLLVRSV 699

Query: 306 YLTCYLSKMSFRRVL*LQWNTKSIIRFSD 220
             + YLS  S  R+   +   K   +FSD
Sbjct: 700 SQSYYLSGRSVSRISCQETVDKEKKKFSD 728


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,991,420
Number of Sequences: 59808
Number of extensions: 405021
Number of successful extensions: 878
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)