Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0007
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     33   0.21 
SB_867| Best HMM Match : Leo1 (HMM E-Value=0)                          33   0.28 
SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)            29   4.6  
SB_14905| Best HMM Match : GIY-YIG (HMM E-Value=5.7)                   29   6.1  
SB_8684| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.1  

>SB_11863| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 921

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
 Frame = +1

Query: 481  TVPTASFSEDI*NRNSYTRAQCFTVRTQSSSKNWISCAPIQK--GKNKHGPLIL---IKK 645
            ++PT   S    +RNS TR Q  + R QSSS    S    ++  GK  H  LI    IK+
Sbjct: 817  SLPTRDQSSSTRDRNSSTRDQSSSTRDQSSSTRDQSSITTEQSSGKVNHAKLITDVKIKQ 876

Query: 646  PKNGHVPSTHRTHHSAYKGGMYRTITLPTARQAF 747
                 +  +    HS  +    ++  L T R+AF
Sbjct: 877  EPEERIEQSADIVHSPNQIAACKSCVLTTERRAF 910


>SB_867| Best HMM Match : Leo1 (HMM E-Value=0)
          Length = 591

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +3

Query: 555 SNSEFFQELDQLCSDPEREEQTRTIDSHKETEKR 656
           S+++ F E ++L SD E+E+  R ++S +ET+ R
Sbjct: 265 SHADLFGEDEELSSDEEKEDNAREVESKEETQAR 298


>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 24/103 (23%), Positives = 43/103 (41%)
 Frame = +3

Query: 237  SSINSIKMVAQKITCPSRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKARKE 416
            S  NS++   ++ T P RS  + ++   P+T           D + FES R         
Sbjct: 1057 SGSNSVEAPRKRATLPRRSSPVISRKPRPDT-----LMRSKSDFERFESHRVTEDSRTSS 1111

Query: 417  PTGERSNRSDSPRKQXXXXXXXXXXXQLFRGYLKPEQLYASTM 545
            P  E S R +SPR+            ++ R  +K ++ + S++
Sbjct: 1112 PDAEYSPR-ESPRESLQQRTPRRSHSEVSRLPVKADRQHYSSL 1153


>SB_31018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/41 (24%), Positives = 25/41 (60%)
 Frame = +2

Query: 218 SLGAQEEFNQFYKNGCSKDHLPESERRYRNSIHQSKHQKTW 340
           ++ AQ EF +  ++   ++ + +S +RY+ ++ ++KH   W
Sbjct: 308 AMEAQAEFTKLLEDAIIENDIAQSVQRYQLAVQEAKHDCRW 348


>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
          Length = 446

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = +3

Query: 285 SRSDDIGTQYTNPNTKRHGFFANESQDSKHFESSRPRSFKAR------KEPTGERSNRSD 446
           S++DDI     N ++++   F N+  DS++ +     SF A       K PT   S  S 
Sbjct: 85  SQNDDISENNDNDDSQKDDDFPNDDDDSRNSDVDSRNSFDASRSEDACKNPTKVSSQDSR 144

Query: 447 SP 452
           SP
Sbjct: 145 SP 146


>SB_14905| Best HMM Match : GIY-YIG (HMM E-Value=5.7)
          Length = 373

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 443 TPVRPFACWFFSGFKRSRSTTFKMFRVLR 357
           TP  P  CW ++  K +R TT ++ ++ +
Sbjct: 129 TPTGPHCCWHYTSTKTTRETTTRLVQMCK 157


>SB_8684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 531 YASTMLHGSNSEFFQELDQLCSDPEREEQTR---TIDSHKETEKRA 659
           +  TM   S SE  QEL +L  DPE +E T    +ID+ K  +  A
Sbjct: 54  HVKTMAEESMSEASQELKELKGDPESQEPTNCAISIDTGKVLDVEA 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,531,145
Number of Sequences: 59808
Number of extensions: 549170
Number of successful extensions: 2487
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2486
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)