Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0005
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2134| Best HMM Match : Endonuclease_7 (HMM E-Value=0.057)           31   1.3  
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                       29   4.0  
SB_20209| Best HMM Match : RnaseH (HMM E-Value=1.5)                    28   9.2  

>SB_2134| Best HMM Match : Endonuclease_7 (HMM E-Value=0.057)
          Length = 1124

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 625 FSRQAERECVPVLISHKRSCYSPE*KDLVSSHEDSKSEYSGSYLKTLFAYV 473
           F ++ +   + V+ SHK   Y+     +  SHED K    G++ K+L A V
Sbjct: 641 FGKKPQMRLMNVIRSHKHDVYTETVNKVALSHEDDKRCSIGAFDKSLCAMV 691


>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -3

Query: 727 NALTL*ANTKGNYCIPNIGVPRFSF--NPAVHSRRDFSRQAERECVPVLISH 578
           +A T+   T+G Y +    VPR+S   N +++  R F      ECV V+ +H
Sbjct: 172 SAFTVVHETRGMYALERRQVPRYSSIQNDSINQSRYFRVSDIDECVGVVCNH 223


>SB_20209| Best HMM Match : RnaseH (HMM E-Value=1.5)
          Length = 212

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +1

Query: 178 WKRSSCQLCKAFIVDTTSLLYNYREHPGKTSVLDMCFR----YLIIDDVTL 318
           W   +  L     VD T+ LY    +   +SVL +C R    YL + +++L
Sbjct: 108 WATKTQGLTIELFVDNTTCLYAINNYSSASSVLQLCLRELWFYLALHNISL 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,548,035
Number of Sequences: 59808
Number of extensions: 384940
Number of successful extensions: 826
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)