Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0068
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_20528| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_49820| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
 Frame = -2

Query: 582 ALDLDDWRGRCSCMPHPLLAALRQGLT----DPT 493
           A+DLDD++G C    +PL+ A++ GLT    DPT
Sbjct: 352 AMDLDDFKGDCGQGSYPLMTAVKTGLTGVAPDPT 385


>SB_20528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 553 PPAPVVQIESPTAPCP-GGHHATPTFP--LGGTFSTLKYEAHCLS*TA 687
           P  PV    S +  CP GG H TP  P  +GG   + + +  C + TA
Sbjct: 182 PDIPVCAAASSSDVCPPGGTHTTPAAPASIGGDVQSFRLQKICDTQTA 229


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +1

Query: 544 AGAPPAPVVQIESPTAPCPGGHHATPTFPLGGTFSTL 654
           A  P  P  +  +PT P P  H  TPT P   TF  L
Sbjct: 119 AHTPTKPTPKTPTPTTPTPTAH--TPTTPTPTTFILL 153


>SB_49820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 229 IKKFLDFYSTAFRLNYSLSKSTRIIDGSN-MNKLRVIRNSKCVFNNLTFVIEISMDESF 56
           ++ FLD    AF +  SL     +IDG+N MN L +  N+         V  I+++  F
Sbjct: 6   LRTFLDGVDEAFEVVQSLRDMKIVIDGNNIMNNLYITSNTNSSCGGEYDVYAIAVERFF 64


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +1

Query: 553 PPAPVVQIESPTAPCPGGHHATPTFP--LGGTFSTLKYEAHC 672
           P  PV    S +  CP   H TPT P  +GG   + + +  C
Sbjct: 173 PDIPVCVAASSSDVCPPQTHTTPTAPASIGGDVQSFRLQKIC 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,569,076
Number of Sequences: 59808
Number of extensions: 436554
Number of successful extensions: 1244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)