Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0062
         (901 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57414| Best HMM Match : SIP1 (HMM E-Value=9.7)                      29   3.9  
SB_44983| Best HMM Match : Death (HMM E-Value=4.8e-09)                 29   3.9  
SB_39181| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-08)                 29   3.9  
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)                       29   5.1  
SB_25959| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)                 29   5.1  
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.8  
SB_29144| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_57414| Best HMM Match : SIP1 (HMM E-Value=9.7)
          Length = 333

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 649 ALPDPPVRLDRIQQKC-RACP-S*RLWLFGDTLTKRFGSL 762
           ALP PP +  R +QKC RA P S R+WL G  +  + G L
Sbjct: 222 ALPVPPEK--RARQKCERAIPRSTRIWLCGRVIVMQEGKL 259


>SB_44983| Best HMM Match : Death (HMM E-Value=4.8e-09)
          Length = 868

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -1

Query: 895 RACMNSTELRSTLLYCKSIQEGYTKVVKDYPDFI 794
           RAC+ +T ++S LL  + ++     V+++Y DF+
Sbjct: 345 RACITNTPMQSVLLAVQKLRRNTVLVLENYDDFL 378


>SB_39181| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-08)
          Length = 251

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +1

Query: 580 HRRGRSSPSSRWLPVTGVRILLKALPDPPVRLDRIQQK---CRACPS*RLWLFGDTL 741
           + R RSSP++ ++    V  LL AL   P+R+D++      C +  +  LW++ D +
Sbjct: 47  NNRLRSSPANYFIASLAVSDLLVALVSLPLRIDQMLHNHNWCLSLEACALWIWSDMI 103


>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
          Length = 1649

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 782 NIRAIEESEPK-RFVNVSPNSQRRQEGHARHFCWIRSSRTGGSGRAFNRIRTPVT 621
           +  A+ +S PK   +NV    +R + G  +  C   S    GSG +     +P+T
Sbjct: 174 SFHALPQSTPKITKINVKRRDKRHRRGRTKKLCKTTSKGVDGSGSSEQSSHSPLT 228


>SB_25959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -1

Query: 646 LIEFAPQLLEASESLDYFFHAGETDWLGTLTDENLMDAILLGAKRIGHAYALAKHPLLLE 467
           +IE   QL+   + L +  HA +   L +LTD   +   + G +   H  A A +P +LE
Sbjct: 90  MIEMEGQLIRVQDQLGFLQHAADPSMLDSLTD---LQQTVEGMRCFLHKTAEATNPDMLE 146


>SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)
          Length = 565

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 782 NIRAIEESEPK-RFVNVSPNSQRRQEGHARHFCWIRSSRTGGSGRAFNRIRTPVT 621
           +  A+ +S PK   +NV    +R + G  +  C   S    GSG +     +P+T
Sbjct: 315 SFHALPQSTPKITKINVKRRDKRHRRGRTKKLCKTTSKGVDGSGSSEQSSHSPLT 369


>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2021

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = -1

Query: 589 HAGETDWLGTLTDENLMDAILLGAKRIGHAYALAKHPLLLEEVIKNDIGLEINIISNAVL 410
           H   T W+ TL++ +  D + L  +     Y L K+   +EE+I N     I+ + +   
Sbjct: 485 HLWNTSWVSTLSNSSSADFVSLSNEIQREIYILYKNSSYIEELIINGFRQPISHVGSLKS 544

Query: 409 SLVRDVRNHPLST 371
           S    V  + L+T
Sbjct: 545 SHCGYVLYYQLNT 557


>SB_29144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 35/126 (27%), Positives = 48/126 (38%), Gaps = 6/126 (4%)
 Frame = -1

Query: 685 GFDLVGQEDLGEPLIEFAPQLLEASESLDYFFHAGETDWLGTLTDENLMDAILLGAKRIG 506
           G DL G E LGE         + A E+LD            TL DE L D +L     + 
Sbjct: 100 GIDLAGDESLGET--PATKNHVMAFEALDQLHAERIGHGYHTLEDEELYDRVLKERIHLE 157

Query: 505 -HAYALAKHPLLLE----EVIKNDIGLEINIISNAVLSLVRD-VRNHPLSTFLSKGLPVV 344
                + K  + LE     V+     LE    S+ +   V    + HP+  F   G    
Sbjct: 158 VSGDRVLKESIQLEVIGDRVLIERFHLETCPTSSILTGAVPPPFKCHPILKFARDGANFS 217

Query: 343 ISSDDP 326
           ++SDDP
Sbjct: 218 LNSDDP 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,312,406
Number of Sequences: 59808
Number of extensions: 543071
Number of successful extensions: 1509
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)