Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0061
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31266| Best HMM Match : PKI (HMM E-Value=1)                         79   3e-15
SB_56437| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   7e-06
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  28   7.6  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.6  

>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
          Length = 1507

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 9/119 (7%)
 Frame = +2

Query: 320 LDEVHIALE---VCSEPRVMNPSAAGALPVPGK------YSYIHKVIDGISVAVNHVQID 472
           LD V I +E   V       N S+    P P K      Y ++ KV+DG+ V +N V + 
Sbjct: 69  LDCVQIDIEQVVVAESKHSPNQSSTQQPPQPNKEKATNQYGFVEKVVDGMYVQINSVLVS 128

Query: 473 FNCDAFTSSVQISRVTVESRTPDGRKGDLRLTRIKCTDTGQLLIFKELEWQSARIEAKA 649
           F    F+++ Q+SR+ V+S TPD +  DLR TR+K    G++L FKE+ W + RI+A A
Sbjct: 129 FKAPEFSANFQMSRLIVQSTTPDWKPDDLRNTRLKDETKGEVLTFKEITWSTLRIDAFA 187


>SB_56437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 25/62 (40%), Positives = 31/62 (50%)
 Frame = +2

Query: 86  KNQLLKHLSRFTKNLSPEQISLSALRGSGXXXXXXXXXXXXXXXXXXPGWLRLTSAKCNR 265
           K Q+L  L  FTKNLSP +IS+  L+G G                  P WLR+T A CN+
Sbjct: 8   KLQVLHALFGFTKNLSPNKISVKFLKGEGELHNLELDEKILSDLLELPPWLRITKADCNK 67

Query: 266 AS 271
            S
Sbjct: 68  IS 69


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 544  TVWSA*LNGHP*NLNTTGERITVEVYLYMI 455
            TVW+A     P    TTG+R+  E YLY+I
Sbjct: 1423 TVWNA---WSPQTFETTGQRLPSESYLYLI 1449


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/84 (16%), Positives = 34/84 (40%)
 Frame = +2

Query: 98  LKHLSRFTKNLSPEQISLSALRGSGXXXXXXXXXXXXXXXXXXPGWLRLTSAKCNRASFR 277
           + ++ ++ KNL P  +SLS   G                    P  +   S + ++    
Sbjct: 1   MSYVDKYIKNLKPSDLSLSIWGGDVVLYNLELNLDVIEKELQLP--ITFLSGRIHKLQIH 58

Query: 278 IQWTKLKTAPIVLNLDEVHIALEV 349
           + WTKL +  + + ++ +   +++
Sbjct: 59  VPWTKLGSEAVKITINTLECVVQL 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,368,266
Number of Sequences: 59808
Number of extensions: 388123
Number of successful extensions: 786
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)