Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0054
(741 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10871| Best HMM Match : SWIM (HMM E-Value=0.11) 31 1.3
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_43248| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_20107| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_20279| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_51799| Best HMM Match : SET (HMM E-Value=0) 29 5.2
SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_27409| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00046) 28 6.9
SB_57703| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 28 9.1
SB_57442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_10871| Best HMM Match : SWIM (HMM E-Value=0.11)
Length = 167
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 450 GLGEDWL*CNHEYYLWLSARMSCI 379
G+G+D C H+Y LW+S C+
Sbjct: 135 GIGKDGSPCKHQYVLWVSKLADCV 158
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 522 TDFVLPNKIYKDKLPHLHSVYKKYSDLNQMYDSKDVNVY 638
T + N Y+ + L V+KKY DL +Y +D N +
Sbjct: 16 TSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTH 54
>SB_43248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 472 ILQNCLIYFPKRTIYTLQILFCQIKYIKTNFLIC 573
ILQNC FPK+ Y +++ + Y +T+F C
Sbjct: 6 ILQNCFQIFPKKAFYEVRLTRDSLIYEETSFRGC 39
>SB_20107| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 450 GLGEDWL*CNHEYYLWLSARMSCI 379
G+G+D C H+Y LW+S C+
Sbjct: 149 GIGKDGSPCKHQYVLWVSKLADCV 172
>SB_20279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1100
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 684 QIFLKRPILCIRTVDGTHSHLLNHTFDSNLSIFCK-RCANE 565
+++L C+R VD T+ LLN DS L + K CA E
Sbjct: 260 EVYLPHKAKCVRLVDATNWELLNLDVDSILDLPMKNNCATE 300
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -1
Query: 684 QIFLKRPILCIRTVDGTHSHLLNHTFDSNLSIFCKRCANEEVCLYIFYLAKQN 526
+++L C+R VD T+ LLN DS L + K + F+L KQN
Sbjct: 373 EVYLPHKAKCVRLVDATNWELLNLDVDSILDLPMKVRIEKH-----FFLIKQN 420
>SB_51799| Best HMM Match : SET (HMM E-Value=0)
Length = 503
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Frame = -1
Query: 657 CIRTVD----GTHSHLLNHTFDSNLSIF 586
C T+D G SH +NH+ D NLS+F
Sbjct: 391 CAYTIDAKKYGNISHFINHSCDPNLSVF 418
>SB_45041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1278
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Frame = +3
Query: 69 VNDDERDDLYQIISRLAHTQNLKLVDDIFTESCSTITKQHFYVQLAKYCV---KNKLYKV 239
+NDDE+ L++I+S + H N++++ + C T+ + F++++ + KN+L K
Sbjct: 691 INDDEQLMLFRILSAILHLGNVEIL-QAGDDEC-TVEENDFHLEMTAVLLGIDKNQLRKW 748
Query: 240 L 242
L
Sbjct: 749 L 749
>SB_27409| Best HMM Match : F5_F8_type_C (HMM E-Value=0.00046)
Length = 240
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +3
Query: 336 SIEQTSDRQSHVLP---VYKTCEQIAKDNIHDYITANPHLVLGMILLEDSTKLFDIFSKE 506
SI QT+ + H + KT + +IHDYI+ P+ L + + + + L ++S
Sbjct: 129 SISQTTYPRLHTHTYDSISKTTYPYQRLHIHDYISTTPYSYLRLHIHDYISILTSLYSS- 187
Query: 507 DYLHFTDFV-LPNKIYKDKLPHLH 575
LH DF+ +P Y H +
Sbjct: 188 --LHIHDFIPIPTTPYSRLHTHTY 209
>SB_57703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 576 SVYKKYSDLNQMYDSKDVNVYHLLSGYRGL 665
SVY+ S M D +D++VY +SG+R +
Sbjct: 8 SVYRDMSVYRDMSDYRDMSVYRDMSGHRDM 37
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 324 AKVLYNPLLPAPHRTSPCLKCGLPHT*SILYTVY 223
A ++NP +PA +TSP K L T I +T Y
Sbjct: 1644 APKIFNPSIPASKKTSPNTKQKLAITFYIAFTAY 1677
>SB_57442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 150 CHLLISNSEYGQVSK*FDTNHLVRHHLQYHKNKVYHKCT 34
C I+ G + + TN L+ H +YH + Y CT
Sbjct: 475 CTRRITECRKGHRKRKWLTNKLLNHEKEYHPGRPYKPCT 513
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,780,903
Number of Sequences: 59808
Number of extensions: 512792
Number of successful extensions: 3116
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3115
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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