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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0046
         (423 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                28   3.7  
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)               28   3.7  
SB_9272| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.7  
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)                      28   3.7  
SB_14560| Best HMM Match : Sushi (HMM E-Value=3.6e-35)                 28   3.7  
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)           27   4.8  
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_41779| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36)              27   6.4  
SB_7712| Best HMM Match : RVT_1 (HMM E-Value=9.7e-28)                  27   8.5  
SB_56996| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)           27   8.5  

>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 230  CALSVECMASEDACGGRAEAVSGGDSREHGCACTA 334
            CA    C+ SE  C G ++   G D  E+   CTA
Sbjct: 3093 CATGRRCIPSEWRCDGESDCEDGSD--ENSAQCTA 3125


>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
          Length = 242

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +2

Query: 353 PAPHEILTPKPRRPSS 400
           P+PH+ +TP+P RP++
Sbjct: 55  PSPHDPITPRPHRPTA 70


>SB_9272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +2

Query: 338 SPRRQPAPHEILTPKPRRPSSGCRLVRK 421
           SPR  P      TPKPR PS G    RK
Sbjct: 43  SPRASPKATRKSTPKPRTPSKGRSPSRK 70


>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
          Length = 595

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +2

Query: 239 SVECMASEDACGGRAEAVSGGDSREH---GCACTAWSPRRQPAPHEILTPKPRRPSSGCR 409
           S +  +  D  GG     SGG S  H   G + ++ S R  P+    + P P   SSG  
Sbjct: 446 SDDSASDSDGGGGGGGGGSGGSSPSHRSSGSSSSSSSRRSSPSGSPAI-PTPSGSSSGSS 504

Query: 410 LVRK 421
           +VR+
Sbjct: 505 IVRR 508


>SB_14560| Best HMM Match : Sushi (HMM E-Value=3.6e-35)
          Length = 716

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 320 CACTAWSP--RRQPAPHEILTPKPRRPSSGCRL 412
           C    W+P  RR+P   +I  P P RP +G R+
Sbjct: 563 CLENGWTPLPRRRPYCRKISCPDPGRPDNGRRI 595


>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
          Length = 1592

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 405  HPLEGLLGFGVRISCGAGCRRGDHAVQAQPCSR-ESPPLTASARPPHA 265
            HP  G  G GV++    GC+  D+ +      + +SPP  AS+  P A
Sbjct: 1435 HPNGGSPGAGVKLRLWPGCQSPDNKLVLDMYFKGKSPPKPASSSTPTA 1482


>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 215 FCVPVCALSVECMASEDACGGRAEAVSGGDSREHGCACTA 334
           F  P C ++V+  ASE    G A  V G +S  + C+CTA
Sbjct: 125 FLGPTCEINVDDCASEPCLNGGA-CVDGANS--YLCSCTA 161


>SB_41779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 375 VRISCGAGCRRGDHAVQAQPCSRESPPLTASARPPHASS 259
           +++S    CR G H     P   E PP   S+  P++ S
Sbjct: 13  IKVSSSKDCRGGIHNGPGDPLVLERPPPRWSSNSPYSES 51


>SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36)
          Length = 1173

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 327  QAQPCSRESPPLTASARPPHASSLAI 250
            QA PC R  P L  +A  P A  LAI
Sbjct: 1039 QASPCPRPRPRLGQAALTPRAQPLAI 1064


>SB_7712| Best HMM Match : RVT_1 (HMM E-Value=9.7e-28)
          Length = 478

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 9   EKNYLKTFRTFHMIFE-RNPKTFLVNVLRRL 98
           +KN L+TFRTF +++E +   T + NV  R+
Sbjct: 144 QKNKLRTFRTFKVVYELQKYLTQINNVQHRI 174


>SB_56996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +2

Query: 236 LSVECMASEDACGGRAEAVSGGDSREHGCACTAWSPRRQPAPHEILTPKPRRPSS 400
           L+V   + +D       AV+   S EH  +   W+P  +P    +    P RP S
Sbjct: 71  LTVTTRSEQDYGSYTCRAVNSVGSHEHVISVIQWTPPGKPESISMNRDPPERPVS 125


>SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)
          Length = 725

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 393 GLLGFGVRISCGAGCRRGDHAVQAQPCSRESPPLTASARPP-HASSLAIH 247
           GL+GF + I     CR   H V A+  ++    + A A PP H S +  H
Sbjct: 528 GLVGFFIFIPATVKCRTITHTVNAE--TQTDASIFAHAYPPAHESRMCEH 575


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,247,843
Number of Sequences: 59808
Number of extensions: 232865
Number of successful extensions: 710
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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