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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0044
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28625| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.49 
SB_26788| Best HMM Match : zf-UBR1 (HMM E-Value=6.7)                   31   0.49 
SB_57117| Best HMM Match : Peptidase_C48 (HMM E-Value=8.4e-05)         31   0.49 
SB_42932| Best HMM Match : zf-UBR1 (HMM E-Value=7.1)                   31   0.49 
SB_41307| Best HMM Match : zf-UBR1 (HMM E-Value=6.7)                   31   0.49 
SB_28011| Best HMM Match : PSCyt1 (HMM E-Value=5.6)                    31   0.65 
SB_49598| Best HMM Match : Wound_ind (HMM E-Value=1.8)                 30   0.85 
SB_36079| Best HMM Match : Peptidase_C48 (HMM E-Value=0.097)           30   0.85 
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_17500| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_28402| Best HMM Match : ResIII (HMM E-Value=0.061)                  27   6.0  
SB_26701| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_15403| Best HMM Match : CH (HMM E-Value=0)                          27   7.9  
SB_3321| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_28625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 175 INKTTGYFLCPKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWE 14
           ++KT    LC       D   +ER   K  VE S+ D  D+   D +    +WE
Sbjct: 244 VSKTADEMLCKTVCSTNDAKCMERDCSKCDVEGSVNDMFDECNEDQSVSYYQWE 297


>SB_26788| Best HMM Match : zf-UBR1 (HMM E-Value=6.7)
          Length = 335

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 175 INKTTGYFLCPKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWE 14
           ++KT    LC       D   +ER   K  VE S+ D  D+   D +    +WE
Sbjct: 144 VSKTADEMLCKTVCSTNDAKCMERDCSKCDVEGSVNDMFDECDEDQSVSYYQWE 197


>SB_57117| Best HMM Match : Peptidase_C48 (HMM E-Value=8.4e-05)
          Length = 524

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 175 INKTTGYFLCPKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWE 14
           ++KT    LC       D   +ER   K  VE S+ D  D+   D +    +WE
Sbjct: 250 VSKTADEMLCKTVCSTNDAKCMERDCSKCDVEGSVNDMFDECNEDQSVSYYQWE 303


>SB_42932| Best HMM Match : zf-UBR1 (HMM E-Value=7.1)
          Length = 271

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 175 INKTTGYFLCPKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWE 14
           ++KT    LC       D   +ER   K  VE S+ D  D+   D +    +WE
Sbjct: 28  VSKTADEMLCKTVCSTNDAKCMERDCSKCDVEGSVNDMFDECNEDQSVSYYQWE 81


>SB_41307| Best HMM Match : zf-UBR1 (HMM E-Value=6.7)
          Length = 243

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 175 INKTTGYFLCPKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWE 14
           ++KT    LC       D   +ER   K  VE S+ D  D+   D +    +WE
Sbjct: 109 VSKTADEMLCKTVCSTNDAKCMERDCSKCDVEGSVNDIFDECNEDQSVSYYQWE 162


>SB_28011| Best HMM Match : PSCyt1 (HMM E-Value=5.6)
          Length = 491

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 193 EDSKVYINKTTGYFLCPKCNLHGDWTILE 107
           ++  ++INKTTG   C  C   G W  L+
Sbjct: 119 QELSLFINKTTGSHFCRNCGASGSWRQLK 147


>SB_49598| Best HMM Match : Wound_ind (HMM E-Value=1.8)
          Length = 373

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 175 INKTTGYFLCPKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWE 14
           ++KT    LC       D   +ER   K  VE S+ D  D+   D +    +WE
Sbjct: 261 VSKTADEMLCKTVCSTNDAKCMERDCSKCDVEGSVNDMFDECNADQSVSYYQWE 314


>SB_36079| Best HMM Match : Peptidase_C48 (HMM E-Value=0.097)
          Length = 796

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = -1

Query: 175 INKTTGYFLCPKCNLHGDWTILERIVKKAKVEVSIKDYIDKLQNDTASFKNEWE 14
           ++KT    LC       D   +ER   K  VE S+ D  D+   D      +WE
Sbjct: 144 VSKTADEMLCKTVCSTNDAKCMERDCSKCDVEGSVNDMFDECNEDQLVSYYQWE 197


>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1743

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 224  FCSYRRESVL---YGKTFLPQYFSYFSNCNFRNILKTNV 331
            F  +R  S+L   Y + +LP + S FS C F  +LK  +
Sbjct: 1135 FLCFRNTSILRSSYKRPYLPIHVSGFSRCLFEFVLKEQI 1173


>SB_17500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -1

Query: 469 FLLAHNVKTAITNFEMLHSIRINRYINSFKSITSRNDWNCYQKQIHNIGLQDIPKI 302
           FLLAH+ +    N++ML  I    +   F+ I  +       K++    ++D  KI
Sbjct: 18  FLLAHDDENMSPNYDMLELIGEGSFAKVFRCIERKTGLEFAAKELRLTDVEDKEKI 73


>SB_28402| Best HMM Match : ResIII (HMM E-Value=0.061)
          Length = 337

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -1

Query: 394 INSFKSITSRNDWNCYQKQIHNIGLQDIPKITVTEIRKVLRQKGFAVQDG 245
           I S K I+ R +     K   N GL+   KI  T+I  V +  GF V  G
Sbjct: 114 IESIKKISQRGNEEGESKDGDNRGLEKDLKIEDTDINGVRQASGFTVIGG 163


>SB_26701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 115 ILERIVKKAKVEVSIK-DYIDKLQNDTASFKNEWEN 11
           ++ER + +   E   K D+I+  +ND  SF NEW +
Sbjct: 258 VVERSLNRRTNEEERKQDFINMDENDAPSFDNEWNH 293


>SB_30923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -1

Query: 196 CEDSKVYINKTTGYF-LCPK 140
           C+D  +Y++   GYF +CPK
Sbjct: 6   CQDGGIYVSMAHGYFCICPK 25


>SB_15403| Best HMM Match : CH (HMM E-Value=0)
          Length = 1907

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 193 EDSKVYINKTTGYFLCPKCNLHGDWTILERIVKKAKVEV 77
           + S +Y     G  LC   NL    TI ER++ K  ++V
Sbjct: 75  DSSDLYEKVKDGILLCKMINLSAPGTIDERVINKPPLKV 113


>SB_3321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 472 FFLLAHNVKTAITNFEMLHSIRINRYINSFKSITSRNDWN 353
           FF++   V   + N     +I    + N FK + S  DWN
Sbjct: 142 FFIVCFQVSLFMVNSTCEPAISTLTHTNKFKRLDSEEDWN 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,249,174
Number of Sequences: 59808
Number of extensions: 242008
Number of successful extensions: 630
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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