Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0038
         (427 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_40783| Best HMM Match : MH2 (HMM E-Value=0)                         28   3.7  
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)                27   8.6  

>SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -2

Query: 327 RHTP*DISYKVSV*SQRLPHPSNRNRITASRQK*AGRWYLPVRTHKRS 184
           RHTP   + + S+  +R   P NR RI+  R++ AG     + T+K++
Sbjct: 115 RHTPPSFTPRSSISRRRSDTPKNRRRISVPRRR-AGSALGRLTTNKKT 161


>SB_40783| Best HMM Match : MH2 (HMM E-Value=0)
          Length = 494

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 212 TYPCGLTRGPTTSNYGNYNFAGLIFTARCYSFTRGKSIVNIC*VRISLEK 63
           T  C +  G T   + N  FA L+  +  Y F     +  +C +RIS  K
Sbjct: 336 TTVCKIPSGCTLKIFNNQEFAQLLSQSVNYGFEAVYELTKMCSIRISFVK 385


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 117  EGITSCSKNQTRKIIISVITGGRTSCESARVGTTAPPIS 233
            +G T+  ++  R     +IT G T+   +  GTTA P+S
Sbjct: 1651 DGTTAVPRSMDRTTAAPMITDGTTAAPMSTDGTTAVPMS 1689


>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
          Length = 220

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = -3

Query: 419 FFFYCLDVWTSSQPTWC*VVTGAHRHLQRKCATHLEI*VIRSQYSHNGCPT 267
           F   C  V  ++  T+C  +   H H  R C+   +       + H+ CP+
Sbjct: 6   FAIVCFSVALATDATYCLSLPNGHYHDPRNCSRFYQCDAFHKAFLHS-CPS 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,272,176
Number of Sequences: 59808
Number of extensions: 290497
Number of successful extensions: 703
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)