Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0037
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -1

Query: 429 RDGVTM*SLFLIQMTLCIFIVNLIQSFTYF*IH*FTPSYNIYKIIASFRFPQVFCEMGTF 250
           +DG+   +LF +    C+FIV  I+    F +   T  +N+ K+   F   +V C     
Sbjct: 100 KDGIGQGTLFNVIKVTCVFIV--IKVTCVFNVIKVTCVFNVIKVTCVFNVIKVTCVFNVI 157

Query: 249 VCTSLF 232
             T +F
Sbjct: 158 KVTCVF 163


>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 140  WRLFGQLLMETKNHPREIRNVFWLFWFHLPWNSEV 244
            WRLF  L+ E        +    +FW+H+  + EV
Sbjct: 1935 WRLFHPLMSEPNIAVHHNKQALLIFWYHVCMDCEV 1969


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,473,180
Number of Sequences: 59808
Number of extensions: 339290
Number of successful extensions: 633
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)