Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0001
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_1009| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               28   7.4  
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  27   9.8  
SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26)                   27   9.8  
SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  

>SB_48351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -2

Query: 539 SVPCRAVRCEPVLPCGTSRGSML----SSACWAGASMGSL 432
           SV CR V+C  V+ C  S+   L    SS  WA  + GSL
Sbjct: 369 SVACRYVQCVHVVMCAKSKRQRLSRQRSSHSWASCARGSL 408


>SB_1009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 498 RKHWFTTHRPTWDGTRHD*WLHRAQ 572
           R HWF  H+PT  G++    +H+AQ
Sbjct: 14  RHHWFVRHKPTITGSKDS--IHKAQ 36


>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 217 LNYFLSYQYCRSLGLQLA-SFETKEKADSITTYLTN 321
           L+YF+++ YCR +   L    +T E + ++ + +TN
Sbjct: 591 LSYFVAFVYCRKINRSLTMGVDTAEMSGAVVSGITN 626


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 181  YFISRMNPYSPELNYFLSYQYCRSLGLQLASFETKEKADSI 303
            +FI+  NPY    +  +       LG  + S ETKEK   I
Sbjct: 2473 HFIAACNPYRKHTDQMIHKLESAGLGYHVTSQETKEKLGKI 2513


>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 554 LVMTCSVPCRAVRCEPVLPC 495
           +V+ C+V CRAV C  VL C
Sbjct: 333 VVLCCAVLCRAVSCRVVLCC 352


>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -3

Query: 400  DRCSSTKTCLCRGYYPMSRSHICCNLHLLDKSLSNLPSPSSRTMPVEDLMICSTD 236
            D C   K    +   P S+  I CN   +  S   +   +   M ++D ++CS D
Sbjct: 954  DACQPDKITCSKDNVPCSKDDITCNKDSIACSRERVACLNDNVMCLKDNVMCSKD 1008


>SB_21794| Best HMM Match : rve (HMM E-Value=5.4e-26)
          Length = 383

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 535 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICE 633
           + H+   GCI     TF W P+   E+K++I E
Sbjct: 133 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITE 164


>SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 535 TEHVMTNGCIALKAPTFHWEPQHCGEIKDFICE 633
           + H+   GCI     TF W P+   E+K++I E
Sbjct: 330 SSHIGIEGCIRRARDTFFW-PRMTVELKEYITE 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,263,802
Number of Sequences: 59808
Number of extensions: 476328
Number of successful extensions: 1355
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)