Silkworm BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0087
         (396 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)                  27   5.5  
SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)                     27   7.3  
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)               27   7.3  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               27   7.3  
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  

>SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)
          Length = 304

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 208 TRADSQEVLPPVITANIITAG 270
           T A  QEV PP+ TANI T G
Sbjct: 102 TAAPLQEVAPPINTANIETDG 122


>SB_34220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 266 RVSFFHFITRCYSFTEEVNREHLMSTYLI*KIGTPPA 376
           +   +H ITRCY+F    ++E +  T+ + + G   A
Sbjct: 52  KAELYHTITRCYAFIFIFSKETIDDTFYLNQYGIAKA 88


>SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)
          Length = 465

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -3

Query: 148 WGSRCNYTETLQLISQGGWRIYVVD 74
           WGS C +++ +++ + GG+ +Y +D
Sbjct: 127 WGSICQWSQMIRVKNCGGFYVYELD 151


>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
          Length = 754

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 241 VITANIITAGFIFSFYYT 294
           +ITAN I   FIF F YT
Sbjct: 281 IITANFIVVSFIFFFAYT 298


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 132 LQRLPHPSNRNALLLHGRNRQ 194
           +QR P P+ RN++ LHG   Q
Sbjct: 30  VQRRPEPTPRNSIFLHGLRAQ 50


>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 153 SNRNALLLHGRNRQGGGTYP 212
           S+ N+  L  +NR+G GTYP
Sbjct: 724 SSDNSFSLEDKNREGPGTYP 743


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,315,349
Number of Sequences: 59808
Number of extensions: 300863
Number of successful extensions: 549
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)